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Report for CCDS39486.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39486.1 Public Mus musculus 6 Tra2a 23 108 98 CCDS HistoryNCBI Gene:101214Re-query CCDS DB by CCDS ID:39486.1Re-query CCDS DB by GeneID:101214See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39486.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031841.8 ENSMUSP00000031841.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031841.8Link to Ensembl Protein Viewer:ENSMUSP00000031841.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031841Re-query CCDS DB by Protein ID:ENSMUSP00000031841
Original member NCBI NM_198102.2 NP_932770.2 Updated not alive Link to Nucleotide Sequence:NM_198102.2Link to Protein Sequence:NP_932770.2Re-query CCDS DB by Nucleotide ID:NM_198102Re-query CCDS DB by Protein ID:NP_932770
Current member NCBI NM_198102.3 NP_932770.2 Accepted alive Link to Nucleotide Sequence:NM_198102.3Link to Protein Sequence:NP_932770.2Re-query CCDS DB by Nucleotide ID:NM_198102Re-query CCDS DB by Protein ID:NP_932770Link to BLAST:NP_932770.2

Chromosomal Locations for CCDS 39486.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49244721 49244731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49244868 49244935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49245476 49245610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49246849 49246964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49248986 49249174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49250863 49251022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49252382 49252515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49263838 49263873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGAGTGATGTAGAGGAGAACAACTTCGAGGGCAGAGAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAA
CTCCTGCTCGTGTAAAATCAGAGAGCAGGTCAGGATCTCGTAGTCCATCACGGGTGTCCAAACATTCTGA
ATCCCATTCTCGATCAAGATCAAAGTCCAGGTCAAGGTCAAGGAGGCATTCGCATAGACGCTACACTCGA
TCCAGGTCACACTCTCATAGGAGACGATCTCGGAGTAGGTCCTATACACCCGAGTATAGGCGGCGGAGGA
GCCGGAGTCACTCTCCAATGTCTAATCGCAGAAGGCATACTGGAAGCAGGGCAAACCCAGATCCCAACAC
TTGCTTGGGAGTATTTGGCCTCAGTTTGTACACAACAGAGAGAGATCTTCGTGAAGTGTTTTCTCGATAT
GGACCTCTGAGTGGTGTTAATGTAGTTTATGATCAGCGAACTGGGAGGTCACGTGGATTTGCTTTTGTGT
ATTTTGAGAGAATAGATGACTCTAAGGAGGCTATGGAGAGAGCAAATGGGATGGAGCTGGACGGTAGAAG
AATCCGTGTGGATTATTCTATCACCAAGAGAGCGCACACACCCACACCAGGCATTTACATGGGCAGACCA
ACTCACAGCGGTGGTGGAGGTGGCGGAGGAGGAGGTGGCGGAGGAGGAGGTGGTGGCGGTGGTAGACGAC
GAGATTCTTACTACGATAGAGGATATGATCGAGGCTATGACAGATACGAAGATTATGATTACCGGTACAG
AAGAAGGTCGCCCTCTCCTTACTACAGTCGCTACAGGTCACGATCGAGATCCCGTTCCTATAGTCCAAGA
CGCTATTGA

Translation (282 aa):
MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTR
SRSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRY
GPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRP
THSGGGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPR
RY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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