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Report for CCDS39442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39442.1 Public Mus musculus 6 Pot1a 23 108 98 CCDS HistoryNCBI Gene:101185Re-query CCDS DB by CCDS ID:39442.1Re-query CCDS DB by GeneID:101185See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39442.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115330.7 ENSMUSP00000110986.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115330.7Link to Ensembl Protein Viewer:ENSMUSP00000110986.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115330Re-query CCDS DB by Protein ID:ENSMUSP00000110986
Original member Current member EBI ENSMUST00000166445.7 ENSMUSP00000131928.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166445.7Link to Ensembl Protein Viewer:ENSMUSP00000131928.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166445Re-query CCDS DB by Protein ID:ENSMUSP00000131928
Original member Current member NCBI NM_133931.5 NP_598692.1 Accepted alive Link to Nucleotide Sequence:NM_133931.5Link to Protein Sequence:NP_598692.1Re-query CCDS DB by Nucleotide ID:NM_133931Re-query CCDS DB by Protein ID:NP_598692Link to BLAST:NP_598692.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598692.1 640 Q91WC1-1 640 100% 0 0

Chromosomal Locations for CCDS 39442.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 25744581 25744693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25745891 25745996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25748291 25748382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25750050 25750138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25752360 25752495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25753149 25753354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25756163 25756319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25757225 25757287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25758818 25758903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25764252 25764424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25771519 25771674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25775525 25775815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25778839 25778969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25794560 25794674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25798009 25798017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGTCTTTGGTTTCAACAGCTCCCTATACATATACACCCCTGAATCTACTCAAGGAAGGTACAATTGCCA
ATGTCTATGGTGTTGTGAAATTCTTTAAGCCTCCGTATGTTAGCAAAGGAACTGATTATTGCTCAGTTGT
AACAATTGTGGACCAGACAAATGTGAAGTTAACCTGTATGCTCTTTAGTGGAAACTATGAAGCCCTCCCC
ATCATTTATAAAGTTGGAGACATTGTTCGCTTCCACAGGCTGAAGATCCAAGTGTATAAAAATGAGCTTC
AGGGAATCAACTGCTCTGGCTTCGCCTCTTTGACATTTGAAGGGACTGTAGGGATGCCTGTCACAGCACG
CACTTCCAGCAAAGTTTTTAGCTTCACTCCTCAGGACCAAAAAATGGTAGAAGCTTTGCGGGTTTGGGCA
TCCAAGCACATCTCGGCGTCTTCAACTTTAGTGCAGCTGTGCGATGCGCAGCCCATGCAGTATTACGACC
TGACCTGTCAGCTCCTGGGTAAAGCACAAGTGGATTCCACAGCATTTCTTCTAAAGGTATGGGATGGAAC
CCAGACTGTGCTTCCCTCCTGGAGAGTCTCCACACAAGATCTAACTTTTGAAGGTGACTTGAGTCACATC
GAACGGCTACAGAGTCTGGTGGTAGACATTCTAGTCTACGATAACCACGTTCAAGTGGCGAGATCCATCG
AGGTTGGATGCTTTCTAAGACTCTATAGCCTCCATACAAAACTTCAGCCTGGAAATTCAGAAACCAGCAG
TTCTGAATCATTAAGGCTGGAGTTCCATCTCCACGGAGGGACCAGTTATGGTCGGGGCATTAGGGTTTTG
CCAGATACAAGCCCTTGTGTGGATCAGCTGAAAAAAGCTTTAGAAGGTGCAAATTTGCCAGTCACTGAGA
CCTCAACTGGTATCTGTCAATCAGAAAATGGGGACAGCTCTGCACTATCAAACTCAGGATCAGGTGCAGT
ATCACCTTATGAAGAAGAACGATGTCAACAAGTCTCTGCTACAATACTTACCAATCACCAACATTTAGAG
AAAACACCACTGTGTGCCATCTTGACGCAAAAAGCTCCTCAACAATATCGAGTCCGCGCCAAACTGAGAT
CCTATTTGCCCAGGAGACTTTCCCAGTCTGTTAAACTTCTCTGTCCTAAATGTCATTCAGTACAAGAAGT
TCCACATGGGGACAGTTTGGATAAAATTTTGCAAGATGCTGCAACTGAAGCTCCAGACATCAAGCTGAAA
GCGACATCATTGTATTATTCAAAAGTCTGGACCACTGAAGACCAGGGCGGACGGCAGGTCGCTGTTCATT
TTGTGAAAAATAATGGCATTCTCCCTGCTTCAAGTGAATGTCTAATTTTGATAGAAGGAGGAAGGCTCTG
CGAAGTCTCTAAACTGTCCAGCAAGTTCCACAGTGTGATGCCTGTGCGGTCCGGCCCTGAGAGCCTGGAG
CTCCTTACCCTTTCAGCCCCGTTCCTCATACAGGGAAAGGTGCATCACTATGGATGTAAACAGTGCTCAA
GCTTGAAACCTATACAAAATCTAAACTCCCGTTTTCATAAAGGACCGTGGACTCCTTCCTCTGTGGCAGA
AGCCCTGGGCGTTGTGCCGCTGCAGTATGTGTTTGTTATGGTTTTCACTCTGGATGACGGGACAGGGGTG
TTGGAAGCTTACCTCAAGGATTCTGAACACTTTTTCAAGATCCCAGCATCTGAAGTCCTCACTGATGACG
ACCTTCAGAGAAGTCTAGAAACGATCATGGATATGATATGTCCCCCAGGAATAAAAGTTGATGCATACCC
ATGGCTAGAGTGCCTCCTCAAGTCCTACAATGTCACCATCGGAACAGAGCGACGAATTTGCTACCAGATT
TTTGATACTACAGTTGCAGAAAATGTTGTCTAG

Translation (640 aa):
MSLVSTAPYTYTPLNLLKEGTIANVYGVVKFFKPPYVSKGTDYCSVVTIVDQTNVKLTCMLFSGNYEALP
IIYKVGDIVRFHRLKIQVYKNELQGINCSGFASLTFEGTVGMPVTARTSSKVFSFTPQDQKMVEALRVWA
SKHISASSTLVQLCDAQPMQYYDLTCQLLGKAQVDSTAFLLKVWDGTQTVLPSWRVSTQDLTFEGDLSHI
ERLQSLVVDILVYDNHVQVARSIEVGCFLRLYSLHTKLQPGNSETSSSESLRLEFHLHGGTSYGRGIRVL
PDTSPCVDQLKKALEGANLPVTETSTGICQSENGDSSALSNSGSGAVSPYEEERCQQVSATILTNHQHLE
KTPLCAILTQKAPQQYRVRAKLRSYLPRRLSQSVKLLCPKCHSVQEVPHGDSLDKILQDAATEAPDIKLK
ATSLYYSKVWTTEDQGGRQVAVHFVKNNGILPASSECLILIEGGRLCEVSKLSSKFHSVMPVRSGPESLE
LLTLSAPFLIQGKVHHYGCKQCSSLKPIQNLNSRFHKGPWTPSSVAEALGVVPLQYVFVMVFTLDDGTGV
LEAYLKDSEHFFKIPASEVLTDDDLQRSLETIMDMICPPGIKVDAYPWLECLLKSYNVTIGTERRICYQI
FDTTVAENVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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