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Report for CCDS392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
392.1 Public Homo sapiens 1 NCDN 24 110 108 CCDS HistoryNCBI Gene:23154Re-query CCDS DB by CCDS ID:392.1Re-query CCDS DB by GeneID:23154See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 392.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356090.8 ENSP00000348394.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356090.8Link to Ensembl Protein Viewer:ENSP00000348394.4Re-query CCDS DB by Nucleotide ID:ENST00000356090Re-query CCDS DB by Protein ID:ENSP00000348394
Original member Current member EBI ENST00000373243.7 ENSP00000362340.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373243.7Link to Ensembl Protein Viewer:ENSP00000362340.2Re-query CCDS DB by Nucleotide ID:ENST00000373243Re-query CCDS DB by Protein ID:ENSP00000362340
Original member Current member NCBI NM_001014839.2 NP_001014839.1 Accepted alive Link to Nucleotide Sequence:NM_001014839.2Link to Protein Sequence:NP_001014839.1Re-query CCDS DB by Nucleotide ID:NM_001014839Re-query CCDS DB by Protein ID:NP_001014839Link to BLAST:NP_001014839.1
Original member Current member NCBI NM_014284.3 NP_055099.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014284.3Link to Protein Sequence:NP_055099.1Re-query CCDS DB by Nucleotide ID:NM_014284Re-query CCDS DB by Protein ID:NP_055099Link to BLAST:NP_055099.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014839.1 729 Q9UBB6-1 729 100% 0 0
NP_055099.1 729 Q9UBB6-1 729 100% 0 0

Chromosomal Locations for CCDS 392.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 35558191 35558223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35559107 35559247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35560326 35561294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35562392 35562633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35563202 35563426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35563767 35563909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 35565227 35565663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2190 nt):
ATGTCGTGTTGTGACCTGGCTGCGGCGGGACAGTTGGGCAAGGCGAGCATCATGGCCTCGGATTGCGAGC
CAGCTCTGAACCAGGCAGAGGGCCGAAACCCCACCCTGGAGCGCTACCTGGGAGCCCTCCGTGAGGCCAA
GAATGACAGCGAGCAGTTTGCAGCCCTGCTGCTAGTGACCAAGGCAGTCAAAGCAGGTGACATAGATGCC
AAAACTCGGCGGCGGATCTTCGATGCTGTCGGCTTCACCTTCCCCAATCGTCTCCTGACCACCAAGGAGG
CGCCGGATGGCTGCCCTGACCATGTTCTGCGGGCTTTGGGTGTGGCCCTGCTGGCCTGCTTCTGCAGTGA
CCCTGAACTGGCCGCCCATCCCCAAGTCCTGAACAAGATTCCCATTCTTAGCACCTTCCTCACAGCCCGG
GGGGACCCGGACGATGCTGCCCGCCGCTCCATGATTGATGACACCTACCAGTGCCTGACGGCTGTAGCAG
GCACACCCAGAGGGCCTCGGCACCTCATTGCTGGTGGCACCGTGTCTGCCCTATGCCAGGCATACCTGGG
GCACGGCTATGGCTTTGACCAGGCCCTGGCACTCCTGGTGGGGCTGCTGGCTGCTGCCGAGACACAGTGC
TGGAAGGAGGCGGAGCCCGACCTGCTGGCCGTGTTGCGGGGCCTCAGTGAGGATTTCCAGAAAGCTGAGG
ATGCCAGCAAGTTTGAGCTCTGCCAGCTGCTGCCCCTCTTTTTGCCCCCGACAACCGTGCCCCCTGAATG
CTACCGGGATCTGCAGGCCGGGCTGGCACGCATCCTGGGAAGCAAGCTGAGCTCCTGGCAGCGCAACCCT
GCACTGAAGCTGGCAGCCCGCCTGGCACACGCCTGCGGCTCCGACTGGATCCCGGCGGGCAGCTCCGGGA
GCAAGTTCCTGGCCCTGCTGGTGAATCTGGCGTGCGTGGAAGTGCGGCTGGCACTGGAGGAGACGGGCAC
GGAGGTGAAAGAGGATGTGGTGACCGCCTGCTATGCCCTCATGGAGTTGGGGATCCAGGAATGCACTCGC
TGTGAGCAGTCACTGCTTAAGGAGCCACAGAAGGTGCAGCTCGTGAGCGTCATGAAGGAGGCCATAGGGG
CTGTTATCCACTACCTGCTGCAGGTGGGGTCAGAGAAGCAGAAGGAGCCCTTTGTGTTTGCCTCGGTGCG
GATCCTGGGTGCCTGGCTGGCCGAGGAGACCTCATCCTTGCGTAAGGAGGTGTGCCAGCTGCTGCCCTTC
CTCGTCCGCTATGCCAAGACCCTCTACGAGGAGGCCGAGGAGGCCAATGACCTTTCCCAGCAGGTGGCCA
ACCTGGCCATCTCCCCCACCACCCCAGGGCCCACCTGGCCAGGAGACGCTCTCCGGCTCCTCCTGCCTGG
CTGGTGCCACCTGACCGTTGAAGATGGGCCCCGGGAGATCCTGATCAAGGAAGGGGCCCCCTCGCTTCTG
TGCAAGTATTTCCTGCAGCAGTGGGAACTCACATCCCCTGGCCACGACACCTCGGTGCTGCCTGACAGCG
TGGAGATTGGCCTGCAGACCTGCTGCCACATCTTCCTCAACCTCGTGGTCACCGCACCGGGGCTGATCAA
GCGTGACGCCTGCTTCACATCTCTAATGAACACCCTCATGACGTCGCTACCAGCACTAGTGCAGCAACAG
GGAAGGCTGCTTCTGGCTGCTAATGTGGCCACCCTGGGGCTCCTCATGGCCCGGCTCCTTAGCACCTCTC
CAGCTCTTCAGGGAACACCAGCATCCCGAGGGTTCTTCGCAGCTGCCATCCTCTTCCTATCACAGTCCCA
CGTGGCGCGGGCCACCCCGGGCTCAGACCAGGCAGTGCTAGCCCTGTCCCCTGAGTATGAGGGCATCTGG
GCCGACCTGCAGGAGCTCTGGTTCCTGGGCATGCAGGCCTTCACCGGCTGTGTGCCTCTGCTGCCCTGGC
TGGCCCCCGCTGCCCTGCGCTCCCGCTGGCCGCAGGAGCTGCTCCAGCTGCTAGGCAGTGTCAGCCCCAA
CTCTGTCAAGCCCGAGATGGTGGCCGCCTATCAGGGTGTCCTGGTGGAGCTGGCGCGGGCCAACCGGCTG
TGCCGGGAGGCCATGAGGCTGCAGGCGGGCGAGGAGACGGCCAGCCACTACCGCATGGCTGCCTTGGAGC
AGTGCCTGTCAGAGCCCTGA

Translation (729 aa):
MSCCDLAAAGQLGKASIMASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDA
KTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFLTAR
GDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQC
WKEAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSWQRNP
ALKLAARLAHACGSDWIPAGSSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTR
CEQSLLKEPQKVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPF
LVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLL
CKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPALVQQQ
GRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSPEYEGIW
ADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRL
CREAMRLQAGEETASHYRMAALEQCLSEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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