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Report for CCDS39165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39165.1 Reviewed, withdrawal pending Mus musculus 5 Pramel52-ps 23 108 98 CCDS HistoryNCBI Gene:100554Re-query CCDS DB by CCDS ID:39165.1Re-query CCDS DB by GeneID:100554See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 39165.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097477.6 ENSMUSP00000095085.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097477.6Link to Ensembl Protein Viewer:ENSMUSP00000095085.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097477Re-query CCDS DB by Protein ID:ENSMUSP00000095085
Original member Current member EBI ENSMUST00000202253.1 ENSMUSP00000143886.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202253.1Link to Ensembl Protein Viewer:ENSMUSP00000143886.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202253Re-query CCDS DB by Protein ID:ENSMUSP00000143886
Original member NCBI NM_178894.4 NP_849225.2 Removed not alive Link to Nucleotide Sequence:NM_178894.4Link to Protein Sequence:NP_849225.2Re-query CCDS DB by Nucleotide ID:NM_178894Re-query CCDS DB by Protein ID:NP_849225Link to BLAST:NP_849225.2

Chromosomal Locations for CCDS 39165.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 94381373 94381641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94383528 94384095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGAGTGGTCAGACCCCACCCACACGCACTCTGCTGACACATGAAGCTTTGATCAAGTCCTCTCTGGAGG
AGTTGCCTACTGTGGTCTTCCCAGCACTATTCAAAGAGGTCTTTGCTGGCAGACACACCAATCTCCTAAA
GGCAATGGTGGCAGCCTGGCCTTTCCCCTGTCTCCCTGTGGGACCATTGATAAAGAAGCCTAACCTAGAA
ACCTTGCAAGCTCTGCTAGATGGAGTAGACATGAGACTGACAAGAGAGTTTCACCCCAGGTGCCTGATGA
CTCCCTTCGAGACCTTCTCCATCACCCAATGCCTAATTTCACAGAGAGACTTTGATTTCTTTTCTTGCTC
CCACAACCTCTTTAAATTAAAACATCTGGAAATAAGAGGGATGATCTTATATGCTTTGGATCTTATGCCT
CTGAGAGGTCTCCTACAAAAAGTAGCAGACACTCTTGAGTTTCTGGATTTTCAGTGGTGTAGGATGAAGG
ACTCCCAGATCAATGCCCTCCTACCTGCCCTCAGTCAATGCACTCACCTCAACCAGATCAACTTCTACAA
CAATGACTTCTCCATGTCCACCCTGAAGGAGCTTTTACAGCACACAGCCAACTGGAGCAAGATGAATGTG
GAACAATGCCCTGCCCCTCTGCAGTGCTATAATGAGTTGGGTCATGTCTCTGTAGAAAGATTTGTCCAAC
TTTGTCAGGAGCTCATGTATACTCTCAGAGCTATAAGGCAGCCCAAGAGCATCTCTTTTGCTACAGATAG
CTGTCACAAATGTTGTAAGCCCTGTGTCTATGACCAGGACCCTATACTTTGTTCTTGTTTTCAGTAA

Translation (278 aa):
MSGQTPPTRTLLTHEALIKSSLEELPTVVFPALFKEVFAGRHTNLLKAMVAAWPFPCLPVGPLIKKPNLE
TLQALLDGVDMRLTREFHPRCLMTPFETFSITQCLISQRDFDFFSCSHNLFKLKHLEIRGMILYALDLMP
LRGLLQKVADTLEFLDFQWCRMKDSQINALLPALSQCTHLNQINFYNNDFSMSTLKELLQHTANWSKMNV
EQCPAPLQCYNELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDSCHKCCKPCVYDQDPILCSCFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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