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Report for CCDS38949.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38949.1 Public Mus musculus 4 Pramel27 23 108 98 CCDS HistoryNCBI Gene:194225Re-query CCDS DB by CCDS ID:38949.1Re-query CCDS DB by GeneID:194225See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38949.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094522.7 ENSMUSP00000092099.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094522.7Link to Ensembl Protein Viewer:ENSMUSP00000092099.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000094522Re-query CCDS DB by Protein ID:ENSMUSP00000092099
Original member Current member NCBI NM_177571.3 NP_808239.2 Accepted alive Link to Nucleotide Sequence:NM_177571.3Link to Protein Sequence:NP_808239.2Re-query CCDS DB by Nucleotide ID:NM_177571Re-query CCDS DB by Protein ID:NP_808239Link to BLAST:NP_808239.2

Chromosomal Locations for CCDS 38949.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 143846539 143846568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143850680 143850990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143851513 143852079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143852755 143853322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGGTGATCTGTCAGCAGTGTCCAGATCAAGATGACTCTTCAGAAGAAGAAACAATTGATGTCTACTCCC
CACCCACCCTGCTGAAGCTGGCAATACACAGGCTACTGAGAGAGGAGGCTTTAGCCATTTCTTCTCTCAA
GGACCTGCCCAATATGCTGTTCCCAGTGTTGTTTGAGGAGGCCTTCATTTTTGGTTATACAAAGATCTTG
AAGGCCATGATACCTGAGTGGCCCTTTTCATACCTTTCTATAGCAGTGCTGATAGACAACTGCAACCTGG
AGAGTTTGAAGGCTGTTCTTGAGGGACTAGATATACTTCTTGCACAAAAGCTTCACTCCAGTAGGTGCAA
ACTCAAAGAGATCAGTTGGAGGGATAAAAACCATGGTTTGGATGGAATACGGCCTGGATCCCATGAAGTT
GAAGGTTTATCAGAGTTCATGGAACAGAAACATCCTAATTGTGTGGAGAAGAAAAAATTGAAGGTAACAA
CTGAACTCTCTGTCATGAATGGCAGACTTAATGAATCTGACACATACTTGTTGGAGTGGACCCAGCAAAG
AAAAGATTCCATTCATCTATTCTGTAGGAAGCTGGTAATTCAAAGCTTAACCAAAGCCACAGTGATAGAA
AACTTCAAAATTGTAAATGCAGATTGTATACCAGAGCTGGAGCTATGTTCTCTTTGCCTACAAGATCTGG
CGTTTCTTAATCCCTACCTGAGACAGATGGACAATCTTCTTGAACTCACACTTGATCACATCACAGATTC
CCTCAGTATTGGTGATTCTGAAATGCTTGAGGAAAGAATGATCACATTGGTTTCTCAGCTTCCCACATTT
CCCTGTCTCCAGAAACTCTGTATAAATGATGTCTACTTTATATACGGCAATCTGAAAGAATTCCTCGGGT
GCCTGAAGAAGCCATTGGTATCATTTTGCATCAGTAACTGTGAACTCTCACAATCAGACTTGGATTACCT
GCCCTATTGCCTGAATATTTTTGAGCTAAAATGTTTGTACATTATTAATATACATTTACAATATTTATGC
CTTGAGCCTCTTGGGTTTCTCCTTGAGAGTGTTAGACATACCCTGGGTTGCTTGGCATTAAAGTCATGTA
ATATGGGGGAACCTCATTTCAAATCCCTGCTGCCTGCCCTAAGTCAATGTTCCCACCTCACAGATGTCAA
TTTCCAGGAAAATGAACTCTCTCTGCTGTCCCTGAAACAACTTCTACAGCACACATCCAAGGTGACCCAG
CTGAGCTATGAGATGTATCCCGGCCCTCTTGAGTGCTATGATGACAGGGGTGTAATACTATCACACAGAA
TAGAACAATTTTGTCCTGAAGTCCTGGATATACCCAGGGCCAAACGACAGCCCAAGGATATCAACTTTGT
TACAACCCAATGTTCTAAGTGTGGTATATATTATGTTTATGATCTGGAGACCCAACGTTGTCGTTTTTTA
AAATGA

Translation (491 aa):
MVICQQCPDQDDSSEEETIDVYSPPTLLKLAIHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKIL
KAMIPEWPFSYLSIAVLIDNCNLESLKAVLEGLDILLAQKLHSSRCKLKEISWRDKNHGLDGIRPGSHEV
EGLSEFMEQKHPNCVEKKKLKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIE
NFKIVNADCIPELELCSLCLQDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTF
PCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLC
LEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCSHLTDVNFQENELSLLSLKQLLQHTSKVTQ
LSYEMYPGPLECYDDRGVILSHRIEQFCPEVLDIPRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFL
K


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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