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Report for CCDS38779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38779.1 Public Mus musculus 4 Cdk5rap2 23 108 98 CCDS HistoryNCBI Gene:214444Re-query CCDS DB by CCDS ID:38779.1Re-query CCDS DB by GeneID:214444See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000144099.7 ENSMUSP00000119891.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144099.7Link to Ensembl Protein Viewer:ENSMUSP00000119891.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144099Re-query CCDS DB by Protein ID:ENSMUSP00000119891
Original member Current member NCBI NM_145990.4 NP_666102.2 Accepted alive Link to Nucleotide Sequence:NM_145990.4Link to Protein Sequence:NP_666102.2Re-query CCDS DB by Nucleotide ID:NM_145990Re-query CCDS DB by Protein ID:NP_666102Link to BLAST:NP_666102.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666102.2 1822 Q8K389 1822 100% 0 0

Chromosomal Locations for CCDS 38779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 70223058 70223114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70223530 70223576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70228598 70228724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70235347 70235490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70238180 70238445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70239285 70239362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70242471 70242595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70243396 70243585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70245381 70245497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70250353 70250472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70254636 70254814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70257335 70257383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70264491 70264723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70266475 70267048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70272644 70272775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70276474 70276708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70281090 70281522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70289845 70290029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70291832 70291927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70298820 70298948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70300566 70300675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70302084 70302214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70307195 70307289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70315324 70315464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70317427 70317597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70337341 70337559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70349144 70349245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70352669 70352788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70353610 70353651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70354713 70354875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70360811 70360965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70364007 70364130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70376793 70376869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70380191 70380301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70401245 70401312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70403474 70403541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70410212 70410267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5469 nt):
ATGGACTCGGGGATGGAAGAGGAAGGCGCCCTGCCTGGGACCCTCAGCGGTTGCAGTGGCCTTCACCCTG
TTCTGCCAAGTGACCTGGATGTCATCAGTGACACTTCTGGCTTGGGAAATGGAGTGCTCCCAAGCATGTC
AGAAGAAAAGGTTTCTCCCACCAGAGCCCGGAACATGAAGGACTTTGAAAACCAAATCACTGAGCTGAAG
AAGGAGAACTTCAATCTAAAGCTCCGGATCTACTTCCTGGAGGAGAGAATCCAGCAGGAGTTTGCTGGCC
CCACCGAGCACATCTACAAGACGAACATTGAACTCAAGGTGGAAGTGGAAAGTCTGAAGCGCGAGCTCCA
GGAGAAAGATCAGTTGCTCGTCAAAGCCTCCAAAGCGGTGGAGAGCCTAGCAGAACGGGGTGGTTCTGAA
GTCCAGCGGGTGAAAGAAGATGCAAGGAAGAAGGTGCAGCAGGTGGAAGACCTCCTAACGAAAAGGATAC
ATCTTCTAGAAGAAGATGTGAAAGCCGCCCAGGCAGAACTGGAGAAGGCCTTTGCGGGGACAGAAACAGA
GAAGGCTCTTCGGCTCAGCTTAGAAAGCAAGCTCTCGGCGATGAAGAAGATGCAGGAGGGGGACCTGGAG
ATGACTCTGGCTCTGGAAGAGAAGGACAGACTGATTGAGGAGTTGAAGCTGTCTTTGAAGAGCAAAGAAG
CTTTAATTCAGTGCCTTAAAGAGGAAAAATCTCAGATGGCATCTCCTGACGAGAACGTGTCATCTGGAGA
ACTCCGAGGACTTTCTGCCACTCTGAGGGAAGAAAAAGAGAGAGACGCTGAGGAATGGCAGAAGGAGAGA
AACCACTTTGAAGAGAGGATCCAGGCACTTCAGGAGGACCTGAGAGAGAAGGAAAGAGAAATTGCTACAG
AGAAGAAAAATAACTTAAAGAGTTATAAAGCCATTCAGGGTCTAACCATGGCATTAAAATCAAAGGAAAG
AGAGGTTGAAGAACTTGATTCCAAAATCAAAGAGGTCACTACGGACTCCACCAAAGGCAGAGAGGATCCC
TTAAAAACCCAGATCCCCAGATTCCAGCTAAGAGAGGGGTCTGAGGACTGTGAAGCTGCGCTGGTAGAGA
AGGAAGCCCTATTGGCCAAGCTACACTCAGAAAATGTCACAAAGAGCACTGAGAACCATAGGTTGCTCAG
GAATGTTAAAAAGGTCACCCAGGAGTTGAATGACTTGAAGAAGGAGAAGTTGAGACTAGAGCAGGCCCTG
GAGGAAGCCCACCAAGAGGGGAACAGAGGAGCCCGAACCATTCACGACCTTAGAAATGAAGTTGAGAAAC
TACGCAAGGAAGTGAGTGAGAGAGAGAAGGCTGTGGAAAAACATTACAAGAGTCTTCCAGGTGAAAGCAA
GACAAAGTTTCATACTCAAGAACAAGTGGTCAGAAGTCTGACAGGCAGTGGCAGTCAGGAGGACCTGCTG
CTTCAGAAATCCAATGAAAAAGATTTGGAAGCAATACAGCAGAACTGCTATTTAATGACTGCAGAGGAGC
TCAAGTTTGGGAGCGATGGCTTAATAACAGAAAAGTGTTCTCAGCAGTCACCAGACAGCAAACTCATCTT
CTCCAAGGAAAAGCAACAATCAGAGTATGAAGGGCTGACTGGGGACTTAAAAGCAGAACAGAACATCTAT
GCCCATCTGGCAAAGACTCAGGACACAGACAGTGTCAGCAACCTGCAGGCTGAGCTGAAAGAGGTCCTTG
CCCTTCGGAAGCAGCTGGAGCAGGATGTTCTTGCCTACCGGAACCTGCAGAAGGCCCTGCAGGAGCAGCT
CAGTGAGATTCGGAGTCGAGAAGAAGAGCCGTTTTCATTTTATAGCGATCAAACATCGTATCTGAGTATT
TGCCTTGAAGAGCACAATCAGTTCCAATTGGAGCATTTTTCTCAAGAAGAACTCAAGAAAAAGGTCAGTG
ACCTCATACAGCTTGTGAAGGACCTGCACACAGACAACCAGCACCTGAAGAAAACCATTTTTGATCTCTC
TTCTGTGGGTTTCCAGGGAAGTGACAGACTTGAGTTAACAAAACAAGAAGAGCTTGTGGCTAGCAAGGAG
GATGAGGACACACTCAAATTTGAAGCGGACGTTGAGACTCCTTTCCAGAGTGACCAGCATTTGGAGCAAA
GTCGTGAGATCATGGAGGACTATGCTGAGGGTGGCTGCAAAAGTGGATATGGAAGGCACATGGATTCCAA
TATTTTAGGTCATGATGGGGCCCAAACTCCTGGTGCCTCTGAAGAGCACACCCTAGAAGATGAGCTCCTG
GGCCTGCTTGCCACTCTCTTCAGTAAGAAGGCCACACCGTTGCTGGAATCCAGGCCAGATCTTCTGAAAG
CACTCGGTGCCCTACTTTTGGAACGCATATGCTTGGCAGAGCAGGGTCGTCCTGGAGATCACCTTGATAG
TAAAACTGAGAAGGCACTTCAGCAAGTAGCTGTTCAGTTGAGAGATGAACTTGGCCATTCCTTCCCTGCC
AACTCGTTCTCCAAGTCATACAATGAAGTCAAGTCAATGTGGGGAAATTGGCTGGTAAAGACAGGAGACG
AAGACACGGTGGAGCTGAAGAGTGTTTCAGTGCAGACCATGGCCATAGAGGACACCCCGCATGGATTCAA
ACCTCAAAGCAAGAGAGATGCTTGGGCAGAGAAACAAGAAGAGGCCATTTTCAGCACTGAGCTTGAGTCA
GAGGCGTTGGGTGAGATGCCAGGGCAACAGGCCACTCACCTCTCATTCCCCAGTGCCATCAACCCGGATG
CCGAGAAGACGGGCTTGTTGATCCAATTAAAGACACCTGAGTTATTGGAAAATTTATATAATCTTCCTGC
TTCGCCAGAGGTGGTGGTGGCTCAACTCCAAGGCCAGGTTCTAGAGCTGCAGAGGGAGCTGAAAGAATTC
AAAACCCGCAACAAGCAACTCCATGAGAAGCTAATTCTGGCAGAGGCAATGATGGAGGGGCTGCCGGTGC
CCAACTCTGCGCTGGTGAATGTGCCTGCAGCCCAGGCTGTTGTGAGAACAGCCTTCCAGGACAACCCAGG
CGAGCAAGAAGGACCTGAAACCACACAGTCTGCTGGGAGAGACAAGGACATGGACAGTGACCAATATACA
AGCTTTGAGATCGATTCTGAAATCTGTCCACCTGATGACCTTGCCTTATTACCAGCATGCAAAGAGAATC
TTGAAGACCTCCTAGGCCCATCCTCCATAGCCACTTACCTGGATTCCAAGAGTCAGCTCTCTGTTAAAGT
CAGCGTGAATGGAACTGACCAGTCTGAGAATATCAATATCCCTGATGACACAGAAGACTTAAAACAGAAA
ATCCACGACTTGCAAACCGAGCTGGAAGGCTACCGGAACATCATTGTCCAGCTACTGAAGCACTCTCAGT
GCAGTGAGGCTATTATCACAGTTTTGTGTGGGACAGAAGGGGCCCAAGATGGCTTGAACAAGCCTAAGGG
CCATATTGATGAGGAAGAGATGACATTTTCAAGTTTGCACCAAGTACGATATGTGAAGCATATGAAAATC
CTCCGTCCACTAACCCCGGAGATGATTGATGGCAAGATGCTAGAGAGCCTCAAGCAGCAGCTGGTGGACC
AGGAGCAGGAGCTACAGAAGGAGCAGGACTTGAACTTGGAACTTTTCGGTGAAATCCATGACCTGCAGAA
CAAGTTCCAAGACCTCTCGCCATCAAGATACGATTCATTGGTTCAGTCCCAAGCGAGGGAGCTCTCCCTT
CAGCGACAGCAAATTAAGGATAGCCATGGCATCTGTGTCATTTACCGTCAACACATGAGCACCATGATCA
AGGCGTTTGAGGAGCTTCTGCAGGCCAGTGATGTGGACAGTTGCGTGGCCGAGGGCTTCCGGGAGCAGCT
GACACAGTGTGCTGGACTGCTAGAGCAACTGGAGAGGCTGTTTCTCCATGGAAAATCAGCCAGAGTGGAA
CCACATCCCCAGAATGAACTGCTCAAGGGGTTAAGGACTGTGGAAGGCAACTTACCCTACCACCATCTCC
TGCCTGAATCTCCTGAGCCTTCTGCCTCCCATGCTCTGTCAGATGATGAAATGTCTGAGAAGTCCTTCCT
GTCTAGAGACCCGAAGCCAGACAGCGATACTGAGAAGTACCCAGCAATGGCGAGCCATTTTCCTCAAGAC
TTACTAATGGAACACATACAGGAAATTCGAACTTTGAGAAAGCATTTGGAAGAATCTATTAAAACAAATG
AGAAGCTCCGGAAACAGCTGGAACGGCAGGGGTCTGAGACTGACCAAGGCTCCAGAAATGTTTCTGCTTG
TGGCTTAGCACTGCACAGCTCTCTGACGTCAGAGATACATTTCCTGAGGAAGCAGAACGAGGCCCTCAGT
ATGATGCTCGAGAAGGGGTCCAAAGATAAACAGAAAGAGAGTGAAAAATTACGTGAGTCCCTGGCTAGGA
AAGCTGAGAGTCTTGAGCAACTTCAGCTAGAGTACACCAGTGTAAGGGAAGAAAATGAAAGGTTACAGAG
AGACATCATTGAGAAGGAGAGACACAACCAGGAGCTGACTGAGGAGGTCTGCAGCAGCCGCCAGGAACTG
AGCAGGGTGCAGGAAGAGGCGAAGTCAAGACAGCAGCTGCTCTCACAGAAGGACAAGCTGCTTCAGTCCC
TCCAAATGGAGCTCAAGGTGTATGAGAAACTGGCCGAGGAACATCCGAGGCTACAGCAAGATGGCAGCAA
ATGTCCTGAGGCCAGCGACAATTCATTTGATCTATTTGAATCCACCCAGGCAATGGCACCTAAATCAGCT
TCTGAGACTCCTCTGCTCTCAGGAACTGATGTTGACTCGCTCTCCTGTGACAGTACCAGTTCTGCCACCA
GCCCTACTAGCATGCCCTGCCTGGTTGCTGGCCACCACATGTGGGCCAGCAAGAGTGGCCACCATATGCT
GGGCCTGATTGAGGACTATGATGCCCTCTATAAGCAGATCAGCTGGGGCCAGACACTGCTTGCCAAGATG
GATGTTCAAACCCAAGAGGCTCTGAGCCCCACAAGTCACAAGCTGGGACCAAAGGGTTCTTCATCCGTGC
CTCTGAGCAAGTTTCTTTCCAGTATGAACACAGCCAAGCTGGTCCTGGAAAAAGCATCCAGGTTGCTGAA
GCTCTTCTGGAGGGTCTCAGTCCCCACCAACGGCCAGTGTTCCCTTCACTGTGAGCAGATTGGAGAAATG
AAGGCAGAGAACACGAAACTACACAAAAAATTGTTTGAACAAGAAAAGAAGCTGCAGAACACAGCAAAAC
TATTGCAGCAGAGCAAGCACCAGGAGAAAGTCATCTTTGATCAGTTGGTCATCACCCACCAAGTCCTTCG
GAAGGCCAGGGGAAACCTGGAGCTCAGGCCTGGGGCCACCCGTCCAGGAGCATCCAGTCCCAGCAGACCG
GGCTCATGA

Translation (1822 aa):
MDSGMEEEGALPGTLSGCSGLHPVLPSDLDVISDTSGLGNGVLPSMSEEKVSPTRARNMKDFENQITELK
KENFNLKLRIYFLEERIQQEFAGPTEHIYKTNIELKVEVESLKRELQEKDQLLVKASKAVESLAERGGSE
VQRVKEDARKKVQQVEDLLTKRIHLLEEDVKAAQAELEKAFAGTETEKALRLSLESKLSAMKKMQEGDLE
MTLALEEKDRLIEELKLSLKSKEALIQCLKEEKSQMASPDENVSSGELRGLSATLREEKERDAEEWQKER
NHFEERIQALQEDLREKEREIATEKKNNLKSYKAIQGLTMALKSKEREVEELDSKIKEVTTDSTKGREDP
LKTQIPRFQLREGSEDCEAALVEKEALLAKLHSENVTKSTENHRLLRNVKKVTQELNDLKKEKLRLEQAL
EEAHQEGNRGARTIHDLRNEVEKLRKEVSEREKAVEKHYKSLPGESKTKFHTQEQVVRSLTGSGSQEDLL
LQKSNEKDLEAIQQNCYLMTAEELKFGSDGLITEKCSQQSPDSKLIFSKEKQQSEYEGLTGDLKAEQNIY
AHLAKTQDTDSVSNLQAELKEVLALRKQLEQDVLAYRNLQKALQEQLSEIRSREEEPFSFYSDQTSYLSI
CLEEHNQFQLEHFSQEELKKKVSDLIQLVKDLHTDNQHLKKTIFDLSSVGFQGSDRLELTKQEELVASKE
DEDTLKFEADVETPFQSDQHLEQSREIMEDYAEGGCKSGYGRHMDSNILGHDGAQTPGASEEHTLEDELL
GLLATLFSKKATPLLESRPDLLKALGALLLERICLAEQGRPGDHLDSKTEKALQQVAVQLRDELGHSFPA
NSFSKSYNEVKSMWGNWLVKTGDEDTVELKSVSVQTMAIEDTPHGFKPQSKRDAWAEKQEEAIFSTELES
EALGEMPGQQATHLSFPSAINPDAEKTGLLIQLKTPELLENLYNLPASPEVVVAQLQGQVLELQRELKEF
KTRNKQLHEKLILAEAMMEGLPVPNSALVNVPAAQAVVRTAFQDNPGEQEGPETTQSAGRDKDMDSDQYT
SFEIDSEICPPDDLALLPACKENLEDLLGPSSIATYLDSKSQLSVKVSVNGTDQSENINIPDDTEDLKQK
IHDLQTELEGYRNIIVQLLKHSQCSEAIITVLCGTEGAQDGLNKPKGHIDEEEMTFSSLHQVRYVKHMKI
LRPLTPEMIDGKMLESLKQQLVDQEQELQKEQDLNLELFGEIHDLQNKFQDLSPSRYDSLVQSQARELSL
QRQQIKDSHGICVIYRQHMSTMIKAFEELLQASDVDSCVAEGFREQLTQCAGLLEQLERLFLHGKSARVE
PHPQNELLKGLRTVEGNLPYHHLLPESPEPSASHALSDDEMSEKSFLSRDPKPDSDTEKYPAMASHFPQD
LLMEHIQEIRTLRKHLEESIKTNEKLRKQLERQGSETDQGSRNVSACGLALHSSLTSEIHFLRKQNEALS
MMLEKGSKDKQKESEKLRESLARKAESLEQLQLEYTSVREENERLQRDIIEKERHNQELTEEVCSSRQEL
SRVQEEAKSRQQLLSQKDKLLQSLQMELKVYEKLAEEHPRLQQDGSKCPEASDNSFDLFESTQAMAPKSA
SETPLLSGTDVDSLSCDSTSSATSPTSMPCLVAGHHMWASKSGHHMLGLIEDYDALYKQISWGQTLLAKM
DVQTQEALSPTSHKLGPKGSSSVPLSKFLSSMNTAKLVLEKASRLLKLFWRVSVPTNGQCSLHCEQIGEM
KAENTKLHKKLFEQEKKLQNTAKLLQQSKHQEKVIFDQLVITHQVLRKARGNLELRPGATRPGASSPSRP
GS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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