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Report for CCDS38653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38653.1 Public Mus musculus 3 Adh4 23 108 98 CCDS HistoryNCBI Gene:26876Re-query CCDS DB by CCDS ID:38653.1Re-query CCDS DB by GeneID:26876See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38653.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013458.8 ENSMUSP00000013458.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013458.8Link to Ensembl Protein Viewer:ENSMUSP00000013458.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000013458Re-query CCDS DB by Protein ID:ENSMUSP00000013458
Original member Current member NCBI NM_011996.2 NP_036126.2 Accepted alive Link to Nucleotide Sequence:NM_011996.2Link to Protein Sequence:NP_036126.2Re-query CCDS DB by Nucleotide ID:NM_011996Re-query CCDS DB by Protein ID:NP_036126Link to BLAST:NP_036126.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036126.2 377 Q9QYY9 377 100% 0 0

Chromosomal Locations for CCDS 38653.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138415532 138415549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138418125 138418226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138419190 138419328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138420625 138420712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138422162 138422393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138423994 138424254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138427971 138428100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138429037 138429175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138430725 138430749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGGGCACCCAGGGAAAAGTTATTAAATGCAAGGCAGCCATTGCCTGGAAAACTGGCAGTCCCCTTTGCA
TTGAAGAAATTGAGGTGTCCCCTCCTAAAGCTTGTGAGGTTCGGATTCAGGTAATCGCCACGTGTGTGTG
CCCTACTGACATCAATGCCACCGATCCTAAGAAGAAAGCTCTCTTCCCGGTAGTCCTTGGTCATGAGTGT
GCAGGAATTGTAGAAAGTGTTGGGCCGGGAGTGACCAACTTCAAACCAGGTGACAAAGTAATCCCATTCT
TTGCACCACAGTGCAAAAGGTGCAAGCTCTGTCTGAGCCCTCTCACAAACCTCTGTGGAAAACTCCGAAA
CTTCAAATACCCCACTATTGATCAGGAGCTCATGGAAGACAGAACCAGCAGGTTTACCTGCAAAGGAAGA
TCAATTTACCATTTCATGGGCGTCAGTTCATTCTCTCAATACACTGTGGTTTCAGAGGCCAATCTTGCCA
GAGTCGATGATGAGGCAAACTTGGAGAGAGTGTGTCTGATTGGATGTGGGTTCTCATCAGGCTACGGGGC
TGCCATCAATACTGCCAAGGTCACCCCCAGTTCCACTTGTGCTGTCTTTGGCCTGGGGTGTGTAGGTCTT
TCTGCCATAATTGGGTGTAAAATAGCAGGTGCTTCCAGAATCATAGCTATTGACATCAACGGTGAGAAGT
TCCCAAAAGCCAAGGCCCTGGGAGCCACTGACTGCCTGAATCCCAGGGAGCTAGACAAACCTGTCCAGGA
TGTCATCACTGAGCTGACAGCTGGAGGTGTGGATTACTCCCTTGACTGTGCAGGAACAGCTCAGACCTTG
AAAGCAGCTGTGGACTGCACTGTATTAGGCTGGGGGTCGTGCACTGTGGTCGGAGCAAAGGTTGACAAAA
TGACTATACCCACCGTGGACGTTATATTGGGCCGTTCTATAAATGGAACATTCTTTGGTGGTTGGAAAAG
TGTAGACTCTGTCCCAAACCTGGTTTCTGACTACAAGAATAAGAAATTCGATCTGGACTTACTGGTGACC
CATGCCCTACCTTTCGAGAGCATAAATGATGCCATTGACCTGATGAAGGAAGGAAAAAGCATCCGAACAA
TCCTGACCTTCTGA

Translation (377 aa):
MGTQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVVLGHEC
AGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGR
SIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPSSTCAVFGLGCVGL
SAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTL
KAAVDCTVLGWGSCTVVGAKVDKMTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVT
HALPFESINDAIDLMKEGKSIRTILTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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