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Report for CCDS3836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3836.1 Public Homo sapiens 4 CASP3 24 110 108 CCDS HistoryNCBI Gene:836Re-query CCDS DB by CCDS ID:3836.1Re-query CCDS DB by GeneID:836See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3836.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308394.9 ENSP00000311032.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308394.9Link to Ensembl Protein Viewer:ENSP00000311032.4Re-query CCDS DB by Nucleotide ID:ENST00000308394Re-query CCDS DB by Protein ID:ENSP00000311032
Original member Current member EBI ENST00000523916.5 ENSP00000428929.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523916.5Link to Ensembl Protein Viewer:ENSP00000428929.1Re-query CCDS DB by Nucleotide ID:ENST00000523916Re-query CCDS DB by Protein ID:ENSP00000428929
Original member Current member EBI ENST00000700100.1 ENSP00000514797.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700100.1Link to Ensembl Protein Viewer:ENSP00000514797.1Re-query CCDS DB by Nucleotide ID:ENST00000700100Re-query CCDS DB by Protein ID:ENSP00000514797
Original member Current member EBI ENST00000700101.1 ENSP00000514798.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700101.1Link to Ensembl Protein Viewer:ENSP00000514798.1Re-query CCDS DB by Nucleotide ID:ENST00000700101Re-query CCDS DB by Protein ID:ENSP00000514798
Original member Current member NCBI NM_001354777.2 NP_001341706.1 Accepted alive Link to Nucleotide Sequence:NM_001354777.2Link to Protein Sequence:NP_001341706.1Re-query CCDS DB by Nucleotide ID:NM_001354777Re-query CCDS DB by Protein ID:NP_001341706Link to BLAST:NP_001341706.1
Original member Current member NCBI NM_004346.4 NP_004337.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004346.4Link to Protein Sequence:NP_004337.2Re-query CCDS DB by Nucleotide ID:NM_004346Re-query CCDS DB by Protein ID:NP_004337Link to BLAST:NP_004337.2
Original member Current member NCBI NM_032991.3 NP_116786.1 Accepted alive Link to Nucleotide Sequence:NM_032991.3Link to Protein Sequence:NP_116786.1Re-query CCDS DB by Nucleotide ID:NM_032991Re-query CCDS DB by Protein ID:NP_116786Link to BLAST:NP_116786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341706.1 277 P42574 277 100% 0 0
NP_004337.2 277 P42574 277 100% 0 0
NP_116786.1 277 P42574 277 100% 0 0

Chromosomal Locations for CCDS 3836.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 184629272 184629501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184631037 184631157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184631765 184631940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184632268 184632396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184635294 184635418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184638401 184638453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGGAGAACACTGAAAACTCAGTGGATTCAAAATCCATTAAAAATTTGGAACCAAAGATCATACATGGAA
GCGAATCAATGGACTCTGGAATATCCCTGGACAACAGTTATAAAATGGATTATCCTGAGATGGGTTTATG
TATAATAATTAATAATAAGAATTTTCATAAAAGCACTGGAATGACATCTCGGTCTGGTACAGATGTCGAT
GCAGCAAACCTCAGGGAAACATTCAGAAACTTGAAATATGAAGTCAGGAATAAAAATGATCTTACACGTG
AAGAAATTGTGGAATTGATGCGTGATGTTTCTAAAGAAGATCACAGCAAAAGGAGCAGTTTTGTTTGTGT
GCTTCTGAGCCATGGTGAAGAAGGAATAATTTTTGGAACAAATGGACCTGTTGACCTGAAAAAAATAACA
AACTTTTTCAGAGGGGATCGTTGTAGAAGTCTAACTGGAAAACCCAAACTTTTCATTATTCAGGCCTGCC
GTGGTACAGAACTGGACTGTGGCATTGAGACAGACAGTGGTGTTGATGATGACATGGCGTGTCATAAAAT
ACCAGTGGAGGCCGACTTCTTGTATGCATACTCCACAGCACCTGGTTATTATTCTTGGCGAAATTCAAAG
GATGGCTCCTGGTTCATCCAGTCGCTTTGTGCCATGCTGAAACAGTATGCCGACAAGCTTGAATTTATGC
ACATTCTTACCCGGGTTAACCGAAAGGTGGCAACAGAATTTGAGTCCTTTTCCTTTGACGCTACTTTTCA
TGCAAAGAAACAGATTCCATGTATTGTTTCCATGCTCACAAAAGAACTCTATTTTTATCACTAA

Translation (277 aa):
MENTENSVDSKSIKNLEPKIIHGSESMDSGISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVD
AANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKIT
NFFRGDRCRSLTGKPKLFIIQACRGTELDCGIETDSGVDDDMACHKIPVEADFLYAYSTAPGYYSWRNSK
DGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESFSFDATFHAKKQIPCIVSMLTKELYFYH


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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