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Report for CCDS38309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38309.1 Public Mus musculus 2 Slc32a1 23 108 98 CCDS HistoryNCBI Gene:22348Re-query CCDS DB by CCDS ID:38309.1Re-query CCDS DB by GeneID:22348See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38309.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045738.4 ENSMUSP00000036299.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045738.4Link to Ensembl Protein Viewer:ENSMUSP00000036299.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000045738Re-query CCDS DB by Protein ID:ENSMUSP00000036299
Original member NCBI NM_009508.2 NP_033534.2 Updated not alive Link to Nucleotide Sequence:NM_009508.2Link to Protein Sequence:NP_033534.2Re-query CCDS DB by Nucleotide ID:NM_009508Re-query CCDS DB by Protein ID:NP_033534
Current member NCBI NM_009508.3 NP_033534.2 Accepted alive Link to Nucleotide Sequence:NM_009508.3Link to Protein Sequence:NP_033534.2Re-query CCDS DB by Nucleotide ID:NM_009508Re-query CCDS DB by Protein ID:NP_033534Link to BLAST:NP_033534.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033534.2 525 O35633-1 525 100% 0 0

Chromosomal Locations for CCDS 38309.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 158611242 158611631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158613817 158615004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGCCACCCTGCTCCGCAGCAAGCTGACCAATGTGGCCACCTCCGTGTCCAACAAGTCCCAGGCCAAGG
TGAGCGGCATGTTTGCCAGGATGGGGTTTCAGGCGGCCACCGATGAGGAAGCGGTGGGCTTCGCGCACTG
CGACGATCTCGACTTTGAGCATCGCCAGGGCCTGCAGATGGACATCCTGAAATCGGAAGGCGAGCCCTGC
GGAGACGAGGGCGCAGAAGCTCCCGTCGAGGGAGACATTCATTATCAGCGCGGCGGCGCTCCTCTGCCAC
CCTCTGGCTCCAAGGACCAGGCCGTGGGAGCTGGTGGGGAGTTCGGGGGTCACGACAAACCCAAGATCAC
GGCGTGGGAAGCGGGCTGGAACGTGACAAATGCCATTCAGGGCATGTTCGTGCTGGGCCTACCCTACGCC
ATCCTCCACGGCGGCTACCTGGGGTTGTTCCTCATCATCTTCGCCGCAGTGGTGTGCTGCTACACCGGCA
AGATCCTCATCGCGTGCCTGTACGAGGAGAACGAAGACGGGGAGGTGGTGCGCGTGCGGGACTCGTATGT
GGCCATAGCTAACGCATGCTGCGCTCCTCGATTCCCCACCCTGGGCGGCCGCGTGGTCAATGTGGCGCAG
ATCATCGAGCTGGTGATGACGTGTATCTTGTACGTCGTGGTGAGCGGCAACCTCATGTACAACAGTTTCC
CGGGGCTGCCCGTGTCGCAGAAGTCCTGGTCCATCATAGCCACAGCGGTGCTGCTGCCCTGCGCCTTCCT
GAAGAATCTCAAGGCCGTGTCCAAGTTCAGTCTGCTGTGTACGCTGGCCCACTTCGTCATCAACATCCTG
GTCATCGCTTACTGTCTCTCTCGCGCGCGTGATTGGGCCTGGGAGAAGGTGAAGTTCTACATCGACGTCA
AGAAGTTTCCCATCTCCATTGGCATCATCGTGTTCAGCTACACGTCGCAGATCTTCCTGCCCTCTCTCGA
AGGCAACATGCAGCAGCCCAGCGAATTCCACTGCATGATGAACTGGACACACATCGCCGCCTGCGTGCTC
AAGGGTCTCTTCGCGCTCGTCGCCTACCTCACCTGGGCCGACGAGACCAAGGAAGTCATCACGGATAACC
TGCCCGGCTCCATCCGCGCCGTGGTCAACCTCTTCCTGGTGGCCAAGGCGCTGCTGTCCTATCCGTTGCC
CTTCTTCGCGGCCGTCGAAGTGCTGGAGAAGTCTCTCTTCCAGGAAGGCAGTCGCGCCTTCTTCCCCGCC
TGCTATGGAGGCGACGGTCGCCTTAAGTCCTGGGGGCTGACGCTGCGCTGCGCGCTGGTGGTCTTCACGC
TGCTCATGGCCATCTACGTGCCACACTTCGCGCTGCTCATGGGCCTCACGGGCAGCCTCACAGGCGCCGG
CCTCTGCTTCCTGCTGCCCAGCCTCTTCCACTTGCGCCTTCTCTGGCGCAAGCTGCTGTGGCACCAGGTC
TTCTTCGATGTGGCCATCTTCGTCATCGGCGGCATCTGCAGCGTGTCCGGCTTCGTGCATTCACTCGAGG
GTCTCATCGAGGCCTACCGAACCAACGCAGAGGACTAG

Translation (525 aa):
MATLLRSKLTNVATSVSNKSQAKVSGMFARMGFQAATDEEAVGFAHCDDLDFEHRQGLQMDILKSEGEPC
GDEGAEAPVEGDIHYQRGGAPLPPSGSKDQAVGAGGEFGGHDKPKITAWEAGWNVTNAIQGMFVLGLPYA
ILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENEDGEVVRVRDSYVAIANACCAPRFPTLGGRVVNVAQ
IIELVMTCILYVVVSGNLMYNSFPGLPVSQKSWSIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINIL
VIAYCLSRARDWAWEKVKFYIDVKKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVL
KGLFALVAYLTWADETKEVITDNLPGSIRAVVNLFLVAKALLSYPLPFFAAVEVLEKSLFQEGSRAFFPA
CYGGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLFHLRLLWRKLLWHQV
FFDVAIFVIGGICSVSGFVHSLEGLIEAYRTNAED


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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