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Report for CCDS38250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38250.1 Public Mus musculus 2 Esf1 23 108 98 CCDS HistoryNCBI Gene:66580Re-query CCDS DB by CCDS ID:38250.1Re-query CCDS DB by GeneID:66580See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38250.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046030.7 ENSMUSP00000036523.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046030.7Link to Ensembl Protein Viewer:ENSMUSP00000036523.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046030Re-query CCDS DB by Protein ID:ENSMUSP00000036523
Original member Current member NCBI NM_001081090.1 NP_001074559.1 Accepted alive Link to Nucleotide Sequence:NM_001081090.1Link to Protein Sequence:NP_001074559.1Re-query CCDS DB by Nucleotide ID:NM_001081090Re-query CCDS DB by Protein ID:NP_001074559Link to BLAST:NP_001074559.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074559.1 845 Q3V1V3 845 100% 0 0

Chromosomal Locations for CCDS 38250.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 140120612 140120905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140123531 140123677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140124928 140125004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140129200 140129287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140138933 140139054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140148753 140148914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140154794 140154941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140157055 140157169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140158480 140158632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140159694 140159794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140160383 140160496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140164209 140164582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140167772 140168414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2538 nt):
ATGTCATCCAAACAAGAAATAATGGATGACCAGCGGTTCAGGCGGGTTTCAAAGGATCCCAGATTTTGGG
AAATGCCAGAAAAGGAACGAAAAGTCAAAATTGACAAGAGGTTTCGAGCCATGTTCCATGATAAAAAGTT
TAAATTGAACTATGCTGTTGATAAAAGAGGTCGTCCTATCAGTCACAGCACTACAGAAGACTTGAAGCGC
TTCTATGACCTTTCAGACTCTGATTCTGATCTCTCTGATGAAGAAAGCAAAATACTCAGTCAGAAGAAAG
CGAAGCAGAAAAAAAAACAGACCAAAAAAGAAGCAAAGTCAATTGAAAAGCCGATTGAAGAGAAAAAAAA
AGAAACCAAGAAAACTGACCAAAAGGATTCTATAAATAAACATGACTTAAATAATTCTGAAAGAGTTCAG
AAAATGAAAAACTCACAGAAACCTCAGAAGATAGATTCAGAAATAAGTCCCAAGAAGGATAATGAAGAAT
TTCTACAAAATAAAAAAAAGAAAAGGGGTACCACTGACCTTAGTGTAGAAGCTTTGCCCAAAGGAAAGCT
AAGGACCAAAGATTCCAGTACCTCTGAAATGGTGAAATCTTCAACAATGAGTTCTTCTAAGGCAAAGAGA
GAAAAGCAATCAGTGGTTCCAGTCATAATGGCAAAAGACAATGATGGTAAAATGCCTGACGAAGATGCCC
TGGAGGAGGATTCAGATAGTGCTAGTGAGCTAGGAAGTGATGAGGAATCTGAAGATGAAATCATAAGTGA
TGGTAAAACCTCAGCTGATGAGGATGAAAGTGAAGAAGAAGACGAAGAAGAAGAGGAAGATAGTGAGGAG
GAAGAAGAGGAGGAGGAGGAGGATGAAAGTGACAGTGGTCCTGATCTTGCAAGGGGTAAAGGAAATGTAG
AAACTAGTTCTGAAGATGAAGATGATTTGGCAGATTTGTTTCCCGAAGAACCTGGTTTTGAACATGCTTG
GAGAGAGTTAGATAAAGACGCTCCTCGGGCTGATGAGATTACACGTCGACTAGCAGTTTGTAACATGGAC
TGGGATAGATTAAAGGCGAAAGATTTGCTGGCTCTGTTCAACTCATTTAAGCCCAAAGGAGGAGTTGTAT
TTTCTGTGAAGATATATCCTTCAGAGTTTGGAAAGGAGAGGATGAAGGAAGAGCAAGTTCAAGGACCAGT
AGAGTTACTAAGTATTCCGGAGGATGCCCCTGAAAAGGACTGGGCCTCTAGAGAGAAGCTAAGAGACTAC
CAGTTCAAACGATTGAAATACTATTATGCAGTAGCGGAGTGTGATTCTCCTGAAACAGCAAGTAAGATTT
ATGAAGATTGTGATGGCCTGGAATTTGAAAGCAGTTGTTCTTTCATAGACTTAAGATTTATACCAGATGA
TATTACCTTTGATGATGAGCCCAAGGATGTGGCCTTAGAAGTTGATTTAACGGCATATAAGCCAAAGTAT
TTCACATCTGCTGCAATGGGAACATCAACGGTGGAGATCACTTGGGATGAGACTGACCATGAAAGAATCA
CGACGCTTAACAGGAAGTTTAAAAAGGATGAGCTTTTGGACATGGACTTTCAAGCCTACTTGGCTTCCTC
TAGCGAGGATGAAGAGGAGGTAGAAGAAGCACCAGAAGGTGAAGAAGGAGTCAACATAGGAGAAGATGGG
AAGACAAAGAAAAGTCAGAAGGATGATGAAGAACAAATTGCTAAATACAGACAGCTCTTGCAGGTTATTC
AAGAAAAAGAAAAGAAAGGAAAAGAAAATGATATGGAAATGGAAATCAAATGGGTTCCAGGTCTTAAGGA
GAGTGCAGAAGAGATGGTCAAAAACAAGTTGGAGGGAAAGGATAAACTGACCCCTTGGGAACAGTTTTTA
GAGAAGAAGAAAGAGAAGAAAAGACTGAAAAAGAAACAGAAGGCTCTTGCTGAAGAAGACAGTGAAGATG
AGCTTCCTTCTGATGTTGATTTCAATGATCCCTACTTTGCTGAAGAAGTAAAAAAAATAGGTATAAAGAA
AAAATCAATGAAATCTGCAAAAGACAGCGCATCTTCAGAGGAAGAAACTGATCTGGAAAAACAAAAGGCT
GAGATGGCTTTACTTGTAATGGATGAGGAAGAGGACAGCAAGAAACACTTCAATTATGACAAGATTGTGG
AGCACCAGAATCTGAGCAAAAAGAAGAAGAAACAGCTCATGAAAAAGAAGGAGTTAGTTGAGGATGACTT
TGAGGTAAATGTCAGTGATGCTCGGTTTCAGGCAATGTATACTTCCCACCTGTTCAATTTGGATCCCTCT
GATCCTAATTTCAAGAAAACAAAAGCTATGGAAAAAATTCTGGAGGAGAAAGCTCGGCATCGAGAACGGA
AGGAAGAACTTCTTATTCAAGCAGTAGAGAGAGCACAGCAGGACACGGGAAAGCCAACACAGAAGCAACC
CATGGATCCCGCCTTGTCCATGCTGATTAAATCTGTGAAAAACAAAACAGAGCAGTTCCAAGCCAGAAAA
AAACAGAGGGTCAAATAA

Translation (845 aa):
MSSKQEIMDDQRFRRVSKDPRFWEMPEKERKVKIDKRFRAMFHDKKFKLNYAVDKRGRPISHSTTEDLKR
FYDLSDSDSDLSDEESKILSQKKAKQKKKQTKKEAKSIEKPIEEKKKETKKTDQKDSINKHDLNNSERVQ
KMKNSQKPQKIDSEISPKKDNEEFLQNKKKKRGTTDLSVEALPKGKLRTKDSSTSEMVKSSTMSSSKAKR
EKQSVVPVIMAKDNDGKMPDEDALEEDSDSASELGSDEESEDEIISDGKTSADEDESEEEDEEEEEDSEE
EEEEEEEDESDSGPDLARGKGNVETSSEDEDDLADLFPEEPGFEHAWRELDKDAPRADEITRRLAVCNMD
WDRLKAKDLLALFNSFKPKGGVVFSVKIYPSEFGKERMKEEQVQGPVELLSIPEDAPEKDWASREKLRDY
QFKRLKYYYAVAECDSPETASKIYEDCDGLEFESSCSFIDLRFIPDDITFDDEPKDVALEVDLTAYKPKY
FTSAAMGTSTVEITWDETDHERITTLNRKFKKDELLDMDFQAYLASSSEDEEEVEEAPEGEEGVNIGEDG
KTKKSQKDDEEQIAKYRQLLQVIQEKEKKGKENDMEMEIKWVPGLKESAEEMVKNKLEGKDKLTPWEQFL
EKKKEKKRLKKKQKALAEEDSEDELPSDVDFNDPYFAEEVKKIGIKKKSMKSAKDSASSEEETDLEKQKA
EMALLVMDEEEDSKKHFNYDKIVEHQNLSKKKKKQLMKKKELVEDDFEVNVSDARFQAMYTSHLFNLDPS
DPNFKKTKAMEKILEEKARHRERKEELLIQAVERAQQDTGKPTQKQPMDPALSMLIKSVKNKTEQFQARK
KQRVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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