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Report for CCDS38151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38151.1 Public Mus musculus 2 Ift70a2 23 108 98 CCDS HistoryNCBI Gene:620631Re-query CCDS DB by CCDS ID:38151.1Re-query CCDS DB by GeneID:620631See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099995.4 ENSMUSP00000097575.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099995.4Link to Ensembl Protein Viewer:ENSMUSP00000097575.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099995Re-query CCDS DB by Protein ID:ENSMUSP00000097575
Original member Current member NCBI NM_001081228.1 NP_001074697.1 Accepted alive Link to Nucleotide Sequence:NM_001081228.1Link to Protein Sequence:NP_001074697.1Re-query CCDS DB by Nucleotide ID:NM_001081228Re-query CCDS DB by Protein ID:NP_001074697Link to BLAST:NP_001074697.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074697.1 664 A2AKQ8 664 100% 0 0

Chromosomal Locations for CCDS 38151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 75976172 75978166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1995 nt):
ATGGCAGGGCTGAGCAACTCCCAGATCCCCGACGGTGAGTTCACAGCAGTGGTGTACAGGCTCATCCGCG
ACTCCCGCTACTCAGAGGCGGTGCAACTGCTGAGCGCAGAGCTGCAGAGGAGCTCCCGCAGCCGCGCAGG
GCTGTCGCTGCTGGCCTACTGCTACTACCGCCTGCAGGAGTTCGAGCTCGCTGCAGAGTGCTATGAGCAG
CTGAGCCAGATGCACCCGGAACTCGAGCAGTACCGCCTGTACCAGGCCCAGGCGCTGTACAAGGCCTGCC
TGTATCCAGAGGCCACCAGGGTCGCCTTCCTCCTGGACAACCCCACCTTCTATAGCCGAGTCCTTCGTTT
ACAAGCTGCTATCAAGTACAGTGAAGGTGACCTCCCAGGAGCCAGGAGCCTGGTGGAGCAGCTGCTGAGT
GGGGAAGCTGGAGAAGACAGTGGAGGGGAGAATGACCCAGATGGTTTGGTCAACATGGGTTGTCTGCTCT
ACAAGGAGGGACACTATGAAGCTGCCTGCTCCAAATTCTTTGCGGCTTTGCAGGCTTCTGGCTACCAGCC
CGATGTATCTTACAACCTAGCTTTAGCTTGTTACAGCAACAGGCACTATGCCCCAGCACTGAAGCATATT
GCCAATATCATTGAGCGTGGCATCCGTCAACACCCAGAACTCGGTGTGGGCATGACCACGGAGGGCATTG
ATGTTCGCAGTGTTGGCAACACTGTAGTCCTTCACCAGACTGCTCTGGTCGAAGCCTTCAACCTCAAGGC
AGCCATAGAGTACCAGCTGAGAAACTACGAGGCAGCCCAGGAAGCCCTCACTGACATGCCACCCAGAGCA
GAGGAAGAGCTGGACCCCGTAACCCTCCACAACCAGGCTCTGATGAACATGGATGCCAAGCCCACAGAGG
GCTTTGAAAAGCTCCAGTTTCTGCTCCAGCAGAACCCCTTTCCCCCAGAGACCTTTGGCAACCTGCTGCT
GCTCTACTGTAAATATGAGTATTTTGACCTGGCAGCTGATGTCCTGGCAGAAAATGCCCACTTGACTTAC
AAGTTCCTCACACCCTATCTCTATGACTTCTTGGATGCCATGATCACTTGCCAGACAGCTCCTGAAGAGG
CTTTCATTAAACTTGATGGGTTGGCTGGCATGCTGACTGAGCAGCTCAGGAGACTCACTAAGCAAGTTCA
AGAAGCAAGGCATAACAGAGATGATGAAGTTGTCATAAAGGCTGTGAATGAATATGATGAAACTCTTGAG
AAATATATTCCTGTACTGATGGCCCAGGCAAAAATCTACTGGAATCTTGAGAATTACCCAATGGTAGAGA
AGATCTTCCGCAAATCTGTGGAATTCTGTAATGACCATGATGTGTGGAAGCTGAATGTGGCCCATGTCCT
CTTCATGCAGGAGAACAAGTACAAAGAGGCCATTGGTTTCTATGAGCCCATTGTCAAGAAGAATTATGAT
AACATCCTGAGTGTCAGTGCTATTGTGTTAGCCAACCTCTGTGTTTCCTATATCATGACAAGTCAAAACG
AGGAAGCTGAGGAGCTCATGAGGAAGATTGAGAAGGAGGAGGAACAACTCTCTTATGGTGACCCAGACAA
GAAAATCTACCACCTTTGCATTGTGAATTTGGTGATAGGAACCCTGTATTGTGCCAAAGGAAACTATGAC
TTTGGCATCTCTCGAGTTATCAAAAGCCTGGAGCCTTACCATAAAAAGCTAGGCACCGATACGTGGTATT
ATGCCAAGAGATGCTTCCTGTCCTTACTAGAGAACATGTCAAAGCACACAATTATGCTAAGGGACAGTGT
CATTCAAGAATGTGTCCAGTTTCTAGAGCACTGTGAAATTTTTGGCAGAAACATCCCTGCTGTCATAGAA
CAGCCCTTGGAGGAAGAAAGAATGCACATTGGAAAAAATACAGTCACATATGAGTCCAGACAGTTGAAAG
CTTTGATTTATGAGATCATAGGGTGGAATATGTAG

Translation (664 aa):
MAGLSNSQIPDGEFTAVVYRLIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQ
LSQMHPELEQYRLYQAQALYKACLYPEATRVAFLLDNPTFYSRVLRLQAAIKYSEGDLPGARSLVEQLLS
GEAGEDSGGENDPDGLVNMGCLLYKEGHYEAACSKFFAALQASGYQPDVSYNLALACYSNRHYAPALKHI
ANIIERGIRQHPELGVGMTTEGIDVRSVGNTVVLHQTALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRA
EEELDPVTLHNQALMNMDAKPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLTY
KFLTPYLYDFLDAMITCQTAPEEAFIKLDGLAGMLTEQLRRLTKQVQEARHNRDDEVVIKAVNEYDETLE
KYIPVLMAQAKIYWNLENYPMVEKIFRKSVEFCNDHDVWKLNVAHVLFMQENKYKEAIGFYEPIVKKNYD
NILSVSAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQLSYGDPDKKIYHLCIVNLVIGTLYCAKGNYD
FGISRVIKSLEPYHKKLGTDTWYYAKRCFLSLLENMSKHTIMLRDSVIQECVQFLEHCEIFGRNIPAVIE
QPLEEERMHIGKNTVTYESRQLKALIYEIIGWNM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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