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Report for CCDS38106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38106.1 Public Mus musculus 2 Zbtb34 23 108 98 CCDS HistoryNCBI Gene:241311Re-query CCDS DB by CCDS ID:38106.1Re-query CCDS DB by GeneID:241311See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38106.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091037.2 ENSMUSP00000088560.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091037.2Link to Ensembl Protein Viewer:ENSMUSP00000088560.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000091037Re-query CCDS DB by Protein ID:ENSMUSP00000088560
Original member Current member EBI ENSMUST00000113158.7 ENSMUSP00000108783.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113158.7Link to Ensembl Protein Viewer:ENSMUSP00000108783.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113158Re-query CCDS DB by Protein ID:ENSMUSP00000108783
Original member NCBI NM_001085507.1 NP_001078976.1 Updated not alive Link to Nucleotide Sequence:NM_001085507.1Link to Protein Sequence:NP_001078976.1Re-query CCDS DB by Nucleotide ID:NM_001085507Re-query CCDS DB by Protein ID:NP_001078976
Current member NCBI NM_001085507.2 NP_001078976.1 Accepted alive Link to Nucleotide Sequence:NM_001085507.2Link to Protein Sequence:NP_001078976.1Re-query CCDS DB by Nucleotide ID:NM_001085507Re-query CCDS DB by Protein ID:NP_001078976Link to BLAST:NP_001078976.1

Chromosomal Locations for CCDS 38106.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 33410971 33412495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33428101 33428132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGAAAGCACCCTGGAAGAATGCAATTCAAGATTACGTTTCGTGTCGGGAGAAATGGACAACAGCAGTT
TCATTCAGTTTGATGTGCCTGAGCACAGCAGCACGGTTCTGAGCCAACTAAATGAGCTCCGCCTGCAAGG
GAAGCTATGTGACATCATCGTCCACATTCAGGGTCAGCCCTTCCGAGCCCACAAAGCCGTCCTCGCAGCC
AGCTCCCCGTATTTCCGGGACCATTCAGCACTGAGCACTATGAGTGGCTTGTCGATCTCTGTGATTAAGA
ACCCCAGCGTGTTTGAGCAGTTGCTCTCCTTCTGTTACACTGGAAGGATGTCCTTGCAGCTGAAGGATGT
TGTCAGTTTTCTGACCGCAGCCAGCTTTCTTCAGATGCAGTGTGTCATTGACAAGTGCACACAGATCCTA
GAGAGCATCCACTCGAAGATCAGCGTGGGAGACGTTGACTCTGTTACCATTGGTGCTGAAGAGAATCCTG
AGAGCCGAAATGGGGTGAAAGATGGCAGCTTCTTCACCAATCCTGTTGAAATCTCCCCTCCGTACTGCCC
TCAGGTACGGCAGCCTCCAGTCAGCAGTGATCTTCGGATGGAGACAACCCCCAACAAAGCCCTTCGGAGC
CGCTTGCAGGAAGAGGGGCACTCAGATCGGGGGAGCAGTGGGAGCGTGTCTGAGTATGAGATTCAGATAG
AAGGGGACCACGAGCAAGGGGACTTGTTGGTGAGAGAGAGCCAGATCACTGAGGTGAAAGTGAAGATGGA
GAAGTCTGACCGGCCCAGCTGCTCCGACAGCTCTTCCCTGGGTGATGACGGCTACCACACGGAGATGGTT
GATGGGGAACAAGTTGTGGCCGTGAATGTGGGCGCCTATGGCTCTGTGCTCCAGCATGCATACCCCTACT
CCCAGACGGCTTCACAGCCTTCCAGTGTGCCAGAAGCTTTTGGAGGTCAGACCAATTCCAGTCCATCCAG
GTCCATGCTGAGCTGCTTCCGAGGCCGTGGGGCCCGCCAGAAGCGAGCTCTGTCTGTTCACCTGCACAGT
GACCTGCAGGGTGTGGTGCAGGGGTCTGACAGTGAAGCCATGATGAACAATCCCGGTTATGAGAGCAGTC
CCCGGGAGAGGAGCGCCAGGGGGTATTGGTACCCATACAACGAGAGGTTGATCTGTATTTACTGTGGGAA
GTCCTTTAACCAGAAGGGAAGCCTCGACAGGCACATGCGGCTGCATATGGGGATCACCCCCTTTGTGTGC
AAGTTCTGTGGGAAGAAGTACACGCGCAAGGACCAGCTGGAGTATCACATCCGGGGCCACACTGATGACA
AACCATTCCGATGCGAGGTCTGTGGGAAGTGCTTTCCATTCCAGGGTACCCTCAACCAGCACCTGCGGAA
AAACCACCCGGGGGTCACCGAAGGCAGGGGTCGCATGGAGTCCCCCGAAAGAACAGACATGTATGTGGAA
CAGAAACTCGAAAGTGATGCATCAGCCTCAGAGATGGCACTAGATTCCCGCCTGGAAATGCACACAGTGT
CTGATGCGCCTGACTAA

Translation (518 aa):
MESTLEECNSRLRFVSGEMDNSSFIQFDVPEHSSTVLSQLNELRLQGKLCDIIVHIQGQPFRAHKAVLAA
SSPYFRDHSALSTMSGLSISVIKNPSVFEQLLSFCYTGRMSLQLKDVVSFLTAASFLQMQCVIDKCTQIL
ESIHSKISVGDVDSVTIGAEENPESRNGVKDGSFFTNPVEISPPYCPQVRQPPVSSDLRMETTPNKALRS
RLQEEGHSDRGSSGSVSEYEIQIEGDHEQGDLLVRESQITEVKVKMEKSDRPSCSDSSSLGDDGYHTEMV
DGEQVVAVNVGAYGSVLQHAYPYSQTASQPSSVPEAFGGQTNSSPSRSMLSCFRGRGARQKRALSVHLHS
DLQGVVQGSDSEAMMNNPGYESSPRERSARGYWYPYNERLICIYCGKSFNQKGSLDRHMRLHMGITPFVC
KFCGKKYTRKDQLEYHIRGHTDDKPFRCEVCGKCFPFQGTLNQHLRKNHPGVTEGRGRMESPERTDMYVE
QKLESDASASEMALDSRLEMHTVSDAPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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