NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3799.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3799.1 Public Homo sapiens 4 TMEM144 24 110 108 CCDS HistoryNCBI Gene:55314Re-query CCDS DB by CCDS ID:3799.1Re-query CCDS DB by GeneID:55314See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3799.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296529.11 ENSP00000296529.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296529.11Link to Ensembl Protein Viewer:ENSP00000296529.6Re-query CCDS DB by Nucleotide ID:ENST00000296529Re-query CCDS DB by Protein ID:ENSP00000296529
Original member Current member NCBI NM_018342.5 NP_060812.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018342.5Link to Protein Sequence:NP_060812.2Re-query CCDS DB by Nucleotide ID:NM_018342Re-query CCDS DB by Protein ID:NP_060812Link to BLAST:NP_060812.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060812.2 345 Q7Z5S9-1 345 100% 0 0

Chromosomal Locations for CCDS 3799.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 158212668 158212776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158215191 158215313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158217321 158217420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158219310 158219390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158232901 158232982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158235438 158235505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158237525 158237643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158240299 158240418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158241509 158241606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158244296 158244349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158253444 158253527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGAGCAACAATGGAGCAGACCTAACCTTTGGTTACATCTCCTGTTTTGTAGCTATCCTTTTGTTTGGCT
CAAATTTTGTGCCACTTAAAAAATTTGATACTGGTGATGGAATGTTTCTCCAGTGGGTTCTTTGTGCTGC
CATATGGTTGGTTGCCTTGGTTGTCAATCTGATATTACATTGTCCAAAGTTTTGGCCTTTTGCAATGCTT
GGGGGCTGCATTTGGGCAACAGGGAACATTGCTGTTGTCCCAATTATCAAAACCATTGGTTTAGGCCTTG
GAATCTTAATCTGGGGATCATTTAATGCCTTAACTGGCTGGGCAAGCTCAAGGTTTGGCTGGTTTGGATT
GGATGCAGAAGAAGTATCAAATCCGCTGCTAAATTACATTGGAGCTGGGCTATCAGTAGTAAGTGCTTTC
ATATTTTTGTTCATCAAAAGTGAAATACCAAATAACACGTGTTCCATGGATACCACTCCATTAATAACAG
AGCATGTGATCAACACAACCCAAGACCCCTGTTCCTGGGTGGATAAACTTTCTACAGTACACCACCGCAT
AGTGGGCTGCAGTCTTGCAGTGATATCTGGAGTACTCTATGGATCTACATTTGTGCCAATCATCTACATC
AAGGACCACAGCAAAAGAAATGATAGTATATATGCAGGGGCAAGCCAATATGATTTAGACTATGTGTTTG
CGCACTTCAGTGGCATCTTTCTTACAAGTACTGTCTACTTTCTGGCCTACTGCATAGCCATGAAAAATAG
TCCTAAACTATATCCTGAAGCAGTCCTACCAGGATTCCTGTCAGGAGTACTTTGGGCTATAGCTACCTGC
TGTTGGTTCATAGCAAATCACTCTCTGAGTGCTGTGGTCAGTTTTCCAATAATCACTGCTGGTCCAGGAT
TTATAGCTGCAATGTGGGGTATCTTCATGTTTAAGGAAATAAAGGGTCTACAAAACTACCTATTAATGAT
ACTTGCATTTTGCATCATCTTGACTGGAGCCTTATGCACTGCTTTTTCTAAAATCTAA

Translation (345 aa):
MSNNGADLTFGYISCFVAILLFGSNFVPLKKFDTGDGMFLQWVLCAAIWLVALVVNLILHCPKFWPFAML
GGCIWATGNIAVVPIIKTIGLGLGILIWGSFNALTGWASSRFGWFGLDAEEVSNPLLNYIGAGLSVVSAF
IFLFIKSEIPNNTCSMDTTPLITEHVINTTQDPCSWVDKLSTVHHRIVGCSLAVISGVLYGSTFVPIIYI
KDHSKRNDSIYAGASQYDLDYVFAHFSGIFLTSTVYFLAYCIAMKNSPKLYPEAVLPGFLSGVLWAIATC
CWFIANHSLSAVVSFPIITAGPGFIAAMWGIFMFKEIKGLQNYLLMILAFCIILTGALCTAFSKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH