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Report for CCDS37425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37425.1 Public Mus musculus 17 Tmem181a 23 108 98 CCDS HistoryNCBI Gene:77106Re-query CCDS DB by CCDS ID:37425.1Re-query CCDS DB by GeneID:77106See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37425.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088940.5 ENSMUSP00000086333.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088940.5Link to Ensembl Protein Viewer:ENSMUSP00000086333.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088940Re-query CCDS DB by Protein ID:ENSMUSP00000086333
Original member Current member NCBI NM_001033178.3 NP_001028350.1 Accepted alive Link to Nucleotide Sequence:NM_001033178.3Link to Protein Sequence:NP_001028350.1Re-query CCDS DB by Nucleotide ID:NM_001033178Re-query CCDS DB by Protein ID:NP_001028350Link to BLAST:NP_001028350.1

Chromosomal Locations for CCDS 37425.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6270583 6270590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6280598 6280701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6286926 6286981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6288986 6289073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6290557 6290678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6294924 6295034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6295722 6295802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6297228 6297327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6297852 6297982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6298149 6298240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6299363 6299420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6300892 6300994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6301402 6301453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6303221 6303303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6304246 6304335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6304577 6304643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6305369 6305447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGAACCGTTGGCACCCATGCGGCTCTATACGCTCTCCAAGCGCCACTTCGTCCTTGTGTTTGTTGTCT
TCTTCATCTGTTTTGGACTGACCGTCTTCGTCGGCATCGAGGGACCCAGAGTGATCGAGACTTTGCCTGC
TAATTATTCACTCAATAGTAGCAAAAAGCTAAAGACAGTTATACCTTCAAACCCACTGTCCACATATAAC
CAACAACTATGGCTGATGTGCGTTGTGGAGCTGGAGCCCTCAGAAGAAACATCCATCCAAACCAGCTTCA
CCATGACAGTGAAGGTCGATGGTGTGTCTCAAGATGGAACCACGACGTACATCCATAACAAGGTTCACAA
CCGGACGAGGACCCTCACGTGTGCAGGGAAATGTGCAGAAATCATCGTGGCCCACCTTGGCTACCTGAAT
TACACACAGTACAGGGTTACTGTGGGGTTTGAGCACCTGAACCAGCCCATCAAGGATATGAACTTCACGT
GGAAGACATACAACCCTGCGTTTTCCCGGCTGGAGATCTGGTTCCACTTCGTGTTTGTGGTGCTCACCTT
CATCGTGATTTGCCTGTTTGTACATTCCCTGCGCAAGTTCTCCATGAGGGACTGGGGCATCGAGCAGAAG
TGGATGTCTGTCCTCCTGGCCCTGCTGCTGCTCTACAATGACCCTTTCTTCCCACTCTCCTTCTTGGTGA
ATAGCTGGTTCCCGGGGATGCTGGACGACTTCTTCCAGTCTCTGTTCCTGTGTGCCCTGCTGCTCTTCTG
GCTGTGCGTGTATCATGGGATACGGGTCCAGGGAGAGAGAAAATGTTTAACTTTCTATTTGCCTAAGTTC
TTCATCGTTGGACTGCTGTGGCTGGCTTCTGTCACTCTGGGAATATGGCAGACATTTAATGAATTAAATG
ATCCCATGTACCAGTATCGGGTTGACACCGGAAACTTTCAGGGCATGAAGGTCTTCTTCATGGTGGTGGC
CGCTGTGTACATTTTATACCTTCTATTCTTGATAGTGCGAGCATGCTCCGAGCTCCGTCATATGCCTTAC
GTGGATCTCAGGTTAAAGTTTTTGACTGCGTTGACCTTTGTAGTGCTAGTTATTAGCATCGTCATCCTCT
ACCTACGGTTTGGAGCACAAGTGTTGCAGGACAACTTCGTAGCAGAACTGTCGGCTCACTACCAGAACTC
AGCTGAATTCCTGTCTTTCTATGGCCTGTTGAACTTTTACTTGTACACGCTGGCCTTTGTGTACTCTCCG
TCGAAGAATGCCCTGTACGAGTCCCAGCTGAAGGATAACCCTGCGTTTTCCATGTTGAACGACTCTGACG
ATGACGTGATTTACGGGAGTGACTATGAAGAAATGCCCCTGCAGAACGGCCAGGCCATCCGTGCCAAGTG
CAGGGAAGAGTCGGACAGTGACTGA

Translation (474 aa):
MEPLAPMRLYTLSKRHFVLVFVVFFICFGLTVFVGIEGPRVIETLPANYSLNSSKKLKTVIPSNPLSTYN
QQLWLMCVVELEPSEETSIQTSFTMTVKVDGVSQDGTTTYIHNKVHNRTRTLTCAGKCAEIIVAHLGYLN
YTQYRVTVGFEHLNQPIKDMNFTWKTYNPAFSRLEIWFHFVFVVLTFIVICLFVHSLRKFSMRDWGIEQK
WMSVLLALLLLYNDPFFPLSFLVNSWFPGMLDDFFQSLFLCALLLFWLCVYHGIRVQGERKCLTFYLPKF
FIVGLLWLASVTLGIWQTFNELNDPMYQYRVDTGNFQGMKVFFMVVAAVYILYLLFLIVRACSELRHMPY
VDLRLKFLTALTFVVLVISIVILYLRFGAQVLQDNFVAELSAHYQNSAEFLSFYGLLNFYLYTLAFVYSP
SKNALYESQLKDNPAFSMLNDSDDDVIYGSDYEEMPLQNGQAIRAKCREESDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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