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Report for CCDS3681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3681.1 Public Homo sapiens 4 OSTC 24 110 108 CCDS HistoryNCBI Gene:58505Re-query CCDS DB by CCDS ID:3681.1Re-query CCDS DB by GeneID:58505See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3681.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361564.9 ENSP00000354676.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361564.9Link to Ensembl Protein Viewer:ENSP00000354676.4Re-query CCDS DB by Nucleotide ID:ENST00000361564Re-query CCDS DB by Protein ID:ENSP00000354676
Original member Current member NCBI NM_021227.4 NP_067050.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021227.4Link to Protein Sequence:NP_067050.1Re-query CCDS DB by Nucleotide ID:NM_021227Re-query CCDS DB by Protein ID:NP_067050Link to BLAST:NP_067050.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067050.1 149 Q9NRP0-1 149 100% 0 0

Chromosomal Locations for CCDS 3681.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108650656 108650794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108655564 108655657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108657450 108657647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108667247 108667265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGGAGACTTTGTACCGTGTCCCGTTCTTAGTGCTCGAATGTCCCAACCTGAAGCTGAAGAAGCCGCCCT
GGTTGCACATGCCGTCGGCCATGACTGTGTATGCTCTGGTGGTGGTGTCTTACTTCCTCATCACCGGAGG
AATAATTTATGATGTTATTGTTGAACCTCCAAGTGTCGGTTCTATGACTGATGAACATGGGCATCAGAGG
CCAGTAGCTTTCTTGGCCTACAGAGTAAATGGACAATATATTATGGAAGGACTTGCATCCAGCTTCCTAT
TTACAATGGGAGGTTTAGGTTTCATAATCCTGGACCGATCGAATGCACCAAATATCCCAAAACTCAATAG
ATTCCTTCTTCTGTTCATTGGATTCGTCTGTGTCCTATTGAGTTTTTTCATGGCTAGAGTATTCATGAGA
ATGAAACTGCCGGGCTATCTGATGGGTTAG

Translation (149 aa):
METLYRVPFLVLECPNLKLKKPPWLHMPSAMTVYALVVVSYFLITGGIIYDVIVEPPSVGSMTDEHGHQR
PVAFLAYRVNGQYIMEGLASSFLFTMGGLGFIILDRSNAPNIPKLNRFLLLFIGFVCVLLSFFMARVFMR
MKLPGYLMG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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