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Report for CCDS36703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36703.1 Public Mus musculus 13 Cntnap3 23 108 98 CCDS HistoryNCBI Gene:238680Re-query CCDS DB by CCDS ID:36703.1Re-query CCDS DB by GeneID:238680See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091554.5 ENSMUSP00000089140.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091554.5Link to Ensembl Protein Viewer:ENSMUSP00000089140.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091554Re-query CCDS DB by Protein ID:ENSMUSP00000089140
Original member NCBI NM_001081129.1 NP_001074598.1 Updated not alive Link to Nucleotide Sequence:NM_001081129.1Link to Protein Sequence:NP_001074598.1Re-query CCDS DB by Nucleotide ID:NM_001081129Re-query CCDS DB by Protein ID:NP_001074598
Current member NCBI NM_001081129.2 NP_001074598.1 Accepted alive Link to Nucleotide Sequence:NM_001081129.2Link to Protein Sequence:NP_001074598.1Re-query CCDS DB by Nucleotide ID:NM_001081129Re-query CCDS DB by Protein ID:NP_001074598Link to BLAST:NP_001074598.1

Chromosomal Locations for CCDS 36703.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 64738547 64738668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64740546 64740617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64740814 64741035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64745709 64745796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64746737 64746870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64748433 64748657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64751677 64751916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64757205 64757423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64758249 64758419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64761919 64762046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64764125 64764281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64771956 64772156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64772669 64772788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64778790 64778896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64781726 64781897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64785219 64785359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64787703 64787964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64792299 64792445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64793229 64793413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64794164 64794367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64799067 64799214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64858598 64858791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64887693 64887803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 64903747 64903840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3864 nt):
ATGGCACGGGTCAACGGAGCATTCCTGGATGCGTTGCTGCTTCTGCTGCTGCTGTCTGTTCAGACCCTGC
CC
CTAGTAGCAGCAGGAGATCCACACAATTGTGATGCTCCGTTGGCTTCTTCTTTGCCTCAGTTATCCTT
C
AGCAGCTCCTCACAGCTGTCCAGCAGTCATGGCCCTGGCTTTGCAAGACTAAATAGAAGAGATGGAGCT
GGT
GGATGGACACCGCTTGTATCAAATAAATATCAGTGGCTGCAGATTGACCTTGGAGAACGAATGGAGG
TC
ACTGCTGTGGCCACCCAGGGTGGATACGGGAGTTCTGACTGGGTGACCAGTTACCTCCTGATGTTCAG
T
GATGGTGGAAGGAACTGGAAACAGTATCATCAAGAAGAAAGCATCTCGGGATTTCCAGGAAACACAAAT
GCA
GACAGTGTGGTACAATATAGTCTCCAGCCTTCCTTCCACACCAGGTTCCTGCGCTTCCTCCCCTTAA
CC
TGGAACCCTAAAGGCAGGATTGGGATGCGGATAGAAGTATATGGGTGTTCATACAAATCTGAGGTGGT
T
TATTTTGATGGACAAAGTTCTCTGCTCTACAAATTTGATAACGGAGCCATAAGACCAGTAAGAGAGGTT
ATT
TCTTTGAAATTTAAAGCCATGCAGAACAGCGGGATTATATTCCATGGAAAAGGACAACATGGGACAC
AT
ATTGTTTTGGAATTAAACAAAGGAAAGCTTGTCGTTTATCTTAATTCAGGCGATGGAAACCTGCCTCC
T
GTTAATTCTATCATGAACTTCACCTTAGGCAGCCTTCTGGATGACCGGCACTGGCACTCTGTACTCATT
GAG
CTCCATAATATGCATATGAACTTCACCCTGGACAAATACATGCATCATGTTCATGTGAACAAGGAAA
CC
AGTTACTTGGATCTTAATTTTGAGATCAGCTTTGGAGAAATCCTGATGCCTGGAGGGCGTTTCCTGAC
A
TTCCCACATAAAAATTTTCATGGATGTTTAGAAAATATCTATTATAACGGAGTCAATATTATTAAATTA
GCC
AAGAAACATGAATCACAAATCCTAATTAAGGGAAATGTGTCCTTCACATGCCCACAACCACAGACAA
TT
CCAGTGACTTTCCTGAGTTCTGGGAGTTACCTGGCTTTGCCAAGTAGTTTAAGGGAAGATAAAATGTC
C
CTCGCTTTTCAGCTTCGAACATGGAACAAGGCAGGACATGTGTTTTTTAGCCAAGTGGGGCACGGTTCA
GGA
AGTTTGGTCCTGTTTCTTAAGAATGGAAAACTCATACTGAACCTCTCTGAGCCTGGTCAACCCTTGC
AG
AGCATCACAACAGGTGCCGTACTGAATGATGGGCTATGGCACTCAGTTTCCGTGTCTGCTAAGGGTAG
C
TACCTAAGCCTTCTGGTAGATGGAGACACTGCTCAGACCCTGATGTCTGTGGAGATTCATTTGGGCGAC
ACT
TACTATTTTGGAGGTTGTCCCAACAACAGCTCTAGCTTTGGATGTGAACATTCTTTTGGAGGCTTCC
AG
GGCTGCCTGAGGCTCATCTCTGTTGGTGACAAAGTAGTGGATCCTATTGCAGTACAGCAGGGAGTGCT
G
GGCAGCTTCAGTGACCTCCAGATAGACTCCTGTGGCATCATAGACCGGTGTTTGCCAAGCTACTGTGAG
CAT
GGGAGTAGATGTACCCAGTCATGGGACACTTTCTCCTGTGACTGTGAAGGCACGGGCTACACTGGAA
CA
ACCTGCCATTCCTCCATCTATGAACAGTCTTGTGAAGCCCACAGGCACAGAGGTAGCCCTTCTGGACT
T
TACTACATTGATGTAGATGGAAGTGGACCACTGGCACCATTTCTTGTATACTGCAATATGACAGCAGAC
ACA
GCATGGACTGTTGTTCAGCATGGAGGCCCCGATGTAGTGACAGTCAGAGGTGGTCCAGAAGGACACA
TG
CATTCTGCAACCTTCTCCTATGCTGCCAATGCAGCACAGCTGCATGCTGTGGTGAATGTTGCAGAGCA
C
TGTGAGCAGCAGGTGGACCTACAATGTAGGACCTCAGGGCCCTCAGATACAGGAGATGGAACCTCCCTG
AGC
TGGTGGGTTGGAAGAAGCAATGAAACATACACTTACTGGGGAGGTTCTCTTCCTAATCCTCAAAAGT
GT
ACTTGTGGATTTGAAGGGAACTGCATTGATTCTCAATACCACTGCAACTGTGATGCTGACCGGAATGA
A
TGGACCAGTGACACAATAGTCCTGTCTCATAAGGAGCACCTGCCCGTCACTGAAATGGTGGTGACAGAC
ACA
GGCCGACCATACTCTGAAGCTGCTTATACACTGGGGCCTTTGCTATGCCAGGGAGACAAGTCATTTT
GG
AACTCAGCTTCCTTCAACACCGAGGCTTCTTACCTTCATTTCCCAACCTTCCGTGGAGAGCTCACCGC
A
GATGTGCACTTCCTTTTTAAGACCACCATTTCCTCTGGTGTGTTCATGGAGAACCTGGGAATCACTGAC
TTC
ATCAGAATAGAGTTGCGTGCTCCCACAGAAGTGACCTTTTCTTTTGATGTTGGGAATGGACCTTGTG
AG
CTCACTATACAGTCACCGACTCCCTTTAATGACAACCGGTGGCATCATGTGAGAGCAGAAAGGAATGT
C
AAGGGTGCATCTCTTCAGGTAGACCAACTCCCTCAGAAGACACAGTCCACTCCTGCTGATGGACATGTT
CGA
CTACAACTCAACAGCCAGCTCTTCATTGGGGGGACGGCCAGCAGGCAGAAGGGCTTCCTGGGATGTA
TC
CGGTCCCTTCAGGTGAATGGAATGGCACTAGACCTGGAGGAAAGGGCTGTAATGACACCAGGAGTGGA
G
CCAGGATGTTCAGGTCACTGCAGCAGCTATGGACACCTGTGTCGAAATGGGGGAATGTGTCAAGAGAAA
CAC
AGAGGGATTGCTTGTGACTGTGCCTTCTCTGCCTACGATGGGCCACTGTGCTCATATGAGATTTCTG
CA
TATTTTGAAACGGGTTCCTCAGTGACCTATAATTTTCAAGAATATTCCACCCTGAGTGCAAACACCAG
C
TACCTGGCTTCTTCATTGCATGGGGATGTCATACTGTCCAGAGAAACCATCACGCTGAGCTTCCGAACC
ACA
CAGACACCATGCTTATTGCTTTATGTGACCTCTTTTTATGAGGAATACCTTTCCATTATCCTGGCCA
AC
AATGGAAGTTTGCAGGTGAGGTACAAGTTGGACAGACATCGGAATGCAGATGCCTTCAACTTTGACCT
T
AGAAACTTAGCAGATGGTCACTTTCACCAGCTGACGATTAACAGGGAAGAAGCAGTAGTCTCTGTAGAG
GTT
AACCAGAGTACAAAGAGGCAAGTCATCTTGTCCTCAGGGACTGAATTCAATGCTGTCAAATCGCTCG
TA
TTGGGAAAGGTTTTAGAACCCCTGGATGCTGATCCTGAAACACAGCAGGCAGCCGCTCAGGGCTTCAC
A
GGCTGCCTCTCTTCTGTGAGATTTGGCCTGGAAGTCCCACTGAAGGCTGCACTGAATCAAAACCGGGCT
AGA
GTCACTATTCAAGGCAGTGTGGCTGCTGCAGCTCATTGTGCAGAAGGCCCTGGTTCTGCAGAGAGGA
AA
CTGTCTCCAGGGCCCTCTATGGATGCAGGTCATTCTGGATCCGCAGAAGATAGACAGCCCCTTCCTAA
C
ACAGACAGGAGTGACCCTGGGGTCATTGGAGGAATAACAGCAGTTGTGATATTTATTTTGCTCTGTGTG
TCT
GCCATAGCCATACGGGTTCATCAACAGAGAAGATTACACCAAAAAAACGAGTCAACAGTTTCAAAAA
CT
GAAGAGTGCTAA


Translation (1287 aa):
MARVNGAFLDALLLLLLLSVQTLPLVAAGDPHNCDAPLASSLPQLSFSSSSQLSSSHGPGFARLNRRDGA
G
GWTPLVSNKYQWLQIDLGERMEVTAVATQGGYGSSDWVTSYLLMFSDGGRNWKQYHQEESIS
GFPGNTN
A
DSVVQYSLQPSFHTRFLRFLPLTWNPKGRIGMRIEVYGCSY
KSEVVYFDGQSSLLYKFDNGAIRPVREV
I
SLKFKAMQNSGIIFHGKGQHGTHIVLELNKGKLVVYLNS
GDGNLPPVNSIMNFTLGSLLDDRHWHSVLI
E
LHNMHMNFTLDKYMHHVHVNKETSYLDLNFE
ISFGEILMPGGRFLTFPHKNFHGCLENIYYNGVNIIKL
A
KKHESQILIK
GNVSFTCPQPQTIPVTFLSSGSYLALPSSLREDKMSLAFQLRTWNKAGHVFFSQVGHGS
G
SLVLFLKNGKLILNLSEPGQPLQSITT
GAVLNDGLWHSVSVSAKGSYLSLLVDGDTAQTLMSVEIHLGD
T
YYFG
GCPNNSSSFGCEHSFGGFQGCLRLISVGDKVVDPIAVQQGVLGSFSDLQIDSCGIIDRCLPSYCE
H
GSRCTQSWDTFSCDCEGTGYTGTTCHS
SIYEQSCEAHRHRGSPSGLYYIDVDGSGPLAPFLVYCNMTAD
T
AWTVVQHGGPDVVTVRGGPEGHMHSATFSYAANAAQLHAVVNVAEHCEQQVDLQCRTSGPSDTG
DGTSL
S
WWVGRSNETYTYWGGSLPNPQKCTCGFEGNCIDSQYHCNCDADRNE
WTSDTIVLSHKEHLPVTEMVVTD
T
GRPYSEAAYTLGPLLCQGD
KSFWNSASFNTEASYLHFPTFRGELTADVHFLFKTTISSGVFMENLGITD
F
IRIELR
APTEVTFSFDVGNGPCELTIQSPTPFNDNRWHHVRAERNVKGASLQVDQLPQKTQSTPADGHV
R
LQLNSQLFI
GGTASRQKGFLGCIRSLQVNGMALDLEERAVMTPGVEPGCSGHCSSYGHLCRNGGMCQEK
H
RGIACDCAFSAYDGPLCSY
EISAYFETGSSVTYNFQEYSTLSANTSYLASSLHGDVILSRETITLSFRT
T
QTPCLLLYVTSFYEEYLSIILANN
GSLQVRYKLDRHRNADAFNFDLRNLADGHFHQLTINREEAVVSVE
V
NQSTKRQVILSSGTEFNAVKSLVLGKVL
EPLDADPETQQAAAQGFTGCLSSVRFGLEVPLKAALNQNRA
R
VTIQGSVAAAAHCAEGPGSAERKLSPGPSMDA
GHSGSAEDRQPLPNTDRSDPGVIGGITAVVIFILLCV
S
AIAIRVHQQRRLHQKNESTVSKTEEC




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser