NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3639.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3639.1 Public Homo sapiens 4 SMARCAD1 24 110 108 CCDS HistoryNCBI Gene:56916Re-query CCDS DB by CCDS ID:3639.1Re-query CCDS DB by GeneID:56916See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3639.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354268.9 ENSP00000346217.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354268.9Link to Ensembl Protein Viewer:ENSP00000346217.4Re-query CCDS DB by Nucleotide ID:ENST00000354268Re-query CCDS DB by Protein ID:ENSP00000346217
Original member Current member NCBI NM_001375855.1 NP_001362784.1 Accepted alive Link to Nucleotide Sequence:NM_001375855.1Link to Protein Sequence:NP_001362784.1Re-query CCDS DB by Nucleotide ID:NM_001375855Re-query CCDS DB by Protein ID:NP_001362784Link to BLAST:NP_001362784.1
Original member Current member NCBI NM_001375856.1 NP_001362785.1 Accepted alive Link to Nucleotide Sequence:NM_001375856.1Link to Protein Sequence:NP_001362785.1Re-query CCDS DB by Nucleotide ID:NM_001375856Re-query CCDS DB by Protein ID:NP_001362785Link to BLAST:NP_001362785.1
Original member Current member NCBI NM_020159.5 NP_064544.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020159.5Link to Protein Sequence:NP_064544.2Re-query CCDS DB by Nucleotide ID:NM_020159Re-query CCDS DB by Protein ID:NP_064544Link to BLAST:NP_064544.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362784.1 1026 Q9H4L7-1 1026 100% 0 0
NP_001362785.1 1026 Q9H4L7-1 1026 100% 0 0
NP_064544.2 1026 Q9H4L7-1 1026 100% 0 0

Chromosomal Locations for CCDS 3639.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 94208395 94208584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94226119 94226296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94233954 94234122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94236952 94237018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94240906 94241006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94249654 94249755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94250752 94250833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94252616 94253007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94264707 94264906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94270728 94270818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94273617 94273716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94274738 94274797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94274890 94274965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94276339 94276474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94277022 94277159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94278422 94278517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94278616 94278733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94278929 94279050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94280592 94280780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94281472 94281590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94283121 94283303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94284960 94285069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 94289473 94289534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3081 nt):
ATGAATCTTTTCAACCTGGACCGTTTTCGCTTTGAGAAAAGGAATAAGATTGAGGAAGCGCCCGAAGCAA
CCCCTCAACCTTCCCAGCCTGGCCCTTCTTCACCAATTTCTCTTAGTGCTGAAGAGGAGAATGCTGAAGG
GGAAGTTAGCAGGGCAAACACTCCTGATTCAGATATAACTGAAAAAACAGAAGATTCTAGTGTTCCAGAA
ACTCCAGATAATGAAAGAAAAGCAAGTATATCATATTTCAAAAATCAAAGAGGAATACAGTATATTGATT
TGTCTTCTGATAGTGAAGATGTCGTTTCCCCAAATTGCTCCAATACAGTTCAAGAGAAAACATTCAACAA
AGATACAGTGATTATAGTTTCTGAGCCATCTGAAGATGAAGAGTCCCAAGGCCTTCCTACCATGGCACGT
AGAAATGATGATATTTCAGAACTGGAAGACCTTTCGGAATTGGAAGACCTTAAAGATGCTAAACTTCAGA
CTTTGAAGGAACTTTTTCCACAAAGAAGTGACAATGATTTACTTAAGTTGATTGAATCAACAAGCACTAT
GGATGGAGCAATTGCTGCTGCCTTGCTGATGTTTGGTGATGCAGGTGGTGGGCCCAGGAAAAGAAAATTA
TCTTCTTCTTCAGAGCCATATGAGGAAGATGAATTTAATGATGATCAATCTATAAAAAAGACAAGACTGG
ATCATGGAGAGGAATCAAATGAGTCTGCAGAATCTAGCAGTAATTGGGAAAAGCAGGAAAGTATTGTACT
GAAATTGCAAAAGGAATTTCCCAATTTTGATAAACAGGAACTTAGAGAAGTACTCAAGGAACATGAATGG
ATGTACACAGAAGCTTTAGAATCTCTAAAAGTGTTTGCAGAAGACCAAGATATGCAATATGTATCACAAA
GTGAGGTTCCAAATGGAAAAGAAGTTTCTTCAAGAAGTCAAAATTACCCTAAAAATGCAACTAAAACAAA
ACTAAAACAGAAATTTTCAATGAAAGCACAAAATGGCTTTAACAAGAAACGTAAAAAAAATGTTTTTAAT
CCAAAGAGAGTTGTTGAAGACTCTGAATATGATTCAGGTTCTGATGTCGGTAGTTCACTAGATGAGGACT
ATAGTAGTGGTGAAGAAGTGATGGAGGATGGCTATAAAGGTAAAATTCTTCACTTCCTTCAAGATGCTTC
AATTGGTGAACTTACTTTGATTCCTCAGTGTTCTCAGAAAAAGGCTCAGAAGATAACAGAACTCCGGCCC
TTTAATAGTTGGGAGGCTCTGTTCACAAAGATGTCCAAAACTAATGGCTTATCAGAAGATTTGATATGGC
ACTGTAAAACACTGATCCAAGAAAGAGATGTAGTTATAAGGCTTATGAACAAATGTGAAGACATTTCAAA
TAAATTGACCAAACAAGTTACCATGCTTACTGGAAATGGAGGTGGATGGAACATAGAACAACCTTCCATT
CTAAACCAAAGTTTGTCACTCAAGCCCTATCAGAAGGTTGGTTTGAATTGGCTGGCATTGGTACATAAAC
ATGGACTTAATGGCATTTTGGCAGATGAAATGGGCCTAGGAAAAACTATTCAAGCCATTGCATTTCTGGC
ATACCTCTATCAGGAGGGTAATAATGGTCCTCATTTGATCGTTGTTCCAGCTTCAACTATAGATAACTGG
TTAAGGGAAGTTAATTTATGGTGCCCTACTTTGAAGGTCCTCTGTTACTATGGTTCTCAAGAAGAACGTA
AACAAATTAGATTTAACATTCATAGTAGATATGAAGATTACAATGTAATTGTGACCACATATAACTGTGC
GATCAGCAGTTCTGATGACCGTAGTCTGTTTCGACGGCTGAAACTTAATTACGCAATTTTTGATGAGGGC
CATATGCTGAAGAATATGGGCTCCATTCGCTACCAGCACCTTATGACAATTAATGCAAATAACCGTTTGC
TGCTCACAGGCACACCTGTACAGAACAATCTGTTAGAACTCATGTCGCTGTTGAATTTTGTTATGCCACA
CATGTTTAGTAGTAGCACCAGTGAAATACGAAGAATGTTTTCCTCTAAGACAAAATCAGCAGATGAGCAA
AGCATATATGAAAAGGAGAGAATAGCACATGCAAAACAAATTATAAAGCCATTTATTCTCAGAAGAGTAA
AAGAAGAGGTTCTCAAGCAGTTACCCCCCAAGAAAGATCGAATTGAGTTGTGTGCAATGTCGGAGAAGCA
GGAGCAACTCTATTTGGGTCTTTTCAACAGATTGAAAAAATCTATCAATAACTTGGAAAAAAACACAGAA
ATGTGCAATGTCATGATGCAGTTGAGGAAAATGGCCAATCATCCTTTATTACATCGCCAATATTACACAG
CTGAAAAACTCAAGGAAATGTCTCAGCTTATGCTAAAGGAACCTACACATTGTGAGGCTAACCCTGACCT
GATCTTTGAAGATATGGAAGTTATGACAGACTTCGAACTACATGTACTTTGTAAACAGTACCGACACATT
AATAACTTTCAGTTAGACATGGACTTGATTTTAGATTCTGGAAAATTTCGAGTTTTAGGATGCATCTTGT
CTGAATTGAAACAGAAGGGTGATAGAGTTGTGTTATTTAGCCAATTTACCATGATGCTGGATATCTTAGA
GGTTCTATTAAAACATCATCAGCATAGGTACCTCAGATTAGATGGAAAGACTCAGATTTCTGAAAGGATT
CATCTAATTGATGAGTTTAATACCGATATGGATATCTTTGTGTTTCTGCTATCAACAAAAGCTGGTGGAT
TAGGAATAAATCTGACTTCAGCAAATGTTGTTATACTTCACGATATTGACTGTAATCCTTATAATGACAA
ACAAGCAGAAGATAGATGCCATAGAGTAGGCCAGACTAAAGAAGTACTAGTTATAAAACTAATAAGCCAA
GGGACGATTGAAGAATCCATGCTAAAAATTAACCAACAGAAATTGAAACTAGAACAGGATATGACTACAG
TAGATGAAGGTGATGAAGGGAGTATGCCAGCAGATATAGCCACATTACTAAAAACATCAATGGGCCTGTG
A

Translation (1026 aa):
MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDITEKTEDSSVPE
TPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTVIIVSEPSEDEESQGLPTMAR
RNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKLIESTSTMDGAIAAALLMFGDAGGGPRKRKL
SSSSEPYEEDEFNDDQSIKKTRLDHGEESNESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEW
MYTEALESLKVFAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFN
PKRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNGGGWNIEQPSI
LNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNW
LREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEG
HMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQ
SIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTE
MCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHI
NNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERI
HLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQ
GTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLLKTSMGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH