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Report for CCDS36299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36299.1 Public Mus musculus 11 Fbxo47 23 108 98 CCDS HistoryNCBI Gene:72973Re-query CCDS DB by CCDS ID:36299.1Re-query CCDS DB by GeneID:72973See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36299.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093939.3 ENSMUSP00000091471.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093939.3Link to Ensembl Protein Viewer:ENSMUSP00000091471.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093939Re-query CCDS DB by Protein ID:ENSMUSP00000091471
Original member NCBI NM_001081435.1 NP_001074904.1 Updated not alive Link to Nucleotide Sequence:NM_001081435.1Link to Protein Sequence:NP_001074904.1Re-query CCDS DB by Nucleotide ID:NM_001081435Re-query CCDS DB by Protein ID:NP_001074904
Current member NCBI NM_001081435.2 NP_001074904.1 Accepted alive Link to Nucleotide Sequence:NM_001081435.2Link to Protein Sequence:NP_001074904.1Re-query CCDS DB by Nucleotide ID:NM_001081435Re-query CCDS DB by Protein ID:NP_001074904Link to BLAST:NP_001074904.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074904.1 451 A2A6H3 451 100% 0 0

Chromosomal Locations for CCDS 36299.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97854376 97854488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97855353 97855512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97856156 97856298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97857668 97857814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97863359 97863535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97865059 97865167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97868592 97868669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97872858 97872934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97877957 97878127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97879384 97879564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGGCGTCTAGAGTAAATACCAGTTTCACTTTGATACCCAAGCAAAAATGTAGACGTTCTAATCATCACT
CCAGCTATTTTTGCAACACCCTTGATTCAGATCCTCAACTCTTATCTACACTTGGAAATTTTAAAGTCTT
ACCATTGGAAATATTACACATAATTTTAAGATACTTGTCAGTGAAAGATATTGGCATGTTAAGTATGGTG
TCTAAAACAGTCAGCCAGCACATAATTAATTATATCTCAACATCATCTGGAAGTAGGAGACTTTTACTAC
AGAACTTTCATGACCTTGATCTGCCTGGCACAAAAGAAGAGACTGCTCTACTGGAGCACTACAGAGCTCT
AGGTCTACTATTTAAAAGATGCACCTTGCTGCTTCCCACCAAGGAAAGACTGAAGTACATTCACAAGATA
CTCTCAGAAGTATCCTGCTTTAAATTCAGTGGCTGTTCAGTTCCTTTGCAGTGTTTAGGATTATCATGTT
ACGGCATGTTTTTACAGACCTTAACAGCAGGTTGGGATGAACTTGAATGCCATCGTGTGTATAACTTCTT
ATGTGAGCTGACTAATCTCTCCCGAAAGATGCAGACAGTTGTCTGCAACAAACCAGGAAGTGCTCGAAAA
CTAGAGTTAAGGGTTAGACTATTCTGTCGGAATGTCCTACTTGATCACTGGACACATCGAAGTGATTCTG
CATTTTGGTTAACTCGAATTTTAAAGCCATGGCCAATGGTGAATCAGGCAAGATTGCTATATATTATCTT
TGGACCAACATCTCCTCATGATGGGCAGGTGATTTGGCAGGAAATGATAGAAGGACCTACAGATGAATCT
AGTCTGAAAGGTTTGGCTAATGCCATTAAGTTACTGTATGACACAGGTGCCAAAGGCTGGACAGCAGATG
ATGTCATCAGTCTTGTAGATGAACTATCAGTGGTTCCCCGGGAGTGGCTTCTGGAGAATAATGCACGCCT
CCTAATCCTGAGCGGGAACAACATCTGCTTCACTTTCATGGCCAGTAAAGCTGTAAATGGACGAGCCGTT
GAACTGGCAAGACTTGTAGTCTTTTTGGCTTTGGTGTGTGAGAAAGAGTTGTACTGCATGGACTGGACAG
TCAGAATGATGCAGAAAGTCTGCAAAGTCTTCAGCACTGCAGCAGAGAGGAAGAGCTTCCTGCAGAGCAT
AGCAAATGCTTTTGCCTGTGTCACGATGGAAATGCTGCAGCCTGTTATGTCGGGAGATCGCGATGACGAT
GACAGAGGCTTCCTGAATCTGTTCCATCTTCTCCATGCTCAGGCGAACTTCCATAAGGAGGTGCTGTATC
TGACCATGAACGCTATCTCTTCCTAA

Translation (451 aa):
MASRVNTSFTLIPKQKCRRSNHHSSYFCNTLDSDPQLLSTLGNFKVLPLEILHIILRYLSVKDIGMLSMV
SKTVSQHIINYISTSSGSRRLLLQNFHDLDLPGTKEETALLEHYRALGLLFKRCTLLLPTKERLKYIHKI
LSEVSCFKFSGCSVPLQCLGLSCYGMFLQTLTAGWDELECHRVYNFLCELTNLSRKMQTVVCNKPGSARK
LELRVRLFCRNVLLDHWTHRSDSAFWLTRILKPWPMVNQARLLYIIFGPTSPHDGQVIWQEMIEGPTDES
SLKGLANAIKLLYDTGAKGWTADDVISLVDELSVVPREWLLENNARLLILSGNNICFTFMASKAVNGRAV
ELARLVVFLALVCEKELYCMDWTVRMMQKVCKVFSTAAERKSFLQSIANAFACVTMEMLQPVMSGDRDDD
DRGFLNLFHLLHAQANFHKEVLYLTMNAISS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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