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Report for CCDS36074.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36074.2 Public Mus musculus 10 D930020B18Rik 23 108 98 CCDS HistoryNCBI Gene:216393Re-query CCDS DB by CCDS ID:36074.2Re-query CCDS DB by GeneID:216393See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 36074.1
The coding region has been updated to represent an alternative 5' splice pattern, resulting in a longer and distinct N-terminus that is better supported by available transcript and homology data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 36074.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120642.8 ENSMUSP00000113963.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120642.8Link to Ensembl Protein Viewer:ENSMUSP00000113963.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120642Re-query CCDS DB by Protein ID:ENSMUSP00000113963
Original member Current member NCBI NM_177335.4 NP_796309.3 Accepted alive Link to Nucleotide Sequence:NM_177335.4Link to Protein Sequence:NP_796309.3Re-query CCDS DB by Nucleotide ID:NM_177335Re-query CCDS DB by Protein ID:NP_796309Link to BLAST:NP_796309.3

Chromosomal Locations for CCDS 36074.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 121641818 121642069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121654749 121654908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121661074 121661146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121667407 121667806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121669157 121669230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121671709 121671853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121677250 121677356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121678344 121678433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121683896 121684019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121685538 121685612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121685821 121685895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121689770 121689948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121692359 121692485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1881 nt):
ATGGCAAGCCCCGCGCGATCCGGCTTCCCCGGGCGCACGAACAGCCGTCTGGACGCGTTCTTGCGGCGGC
ACCTGCCTCCGGAGGTGTACGACGCGGTCCGCGCCTACGAGCCGTGCATCGTGGTGTCGGACGCCGAGAA
GCACACGTTCAAGTACGTGGTGCTCAGCGACCGGCTCATCTACCTGACCGAGAACCCGCCCAAGTCCATC
CGGCGGGTAGTGGCTTTGCGGGACGTCGTGGCCATTGACCTGATCGACGATTACCCAGAATTTCTGAGTT
CACCAGACAGAGAGATCAACCAGCACATTCGGATTGTCTATTCGTCAACGGTCTTGAAAAAGGAGCGCGG
AAAATCGAAAGGGGTCGGGAAATTCCTATTTCCTGCTCACCACAGCACTGCCAACAAAAAAGTCAAGCAA
GAGAATAATGGCCCTACCTTTTGGAGAAGAAAAGTTTCTAGGACTCTGAATGAATCCTCTCTCAGGTCCC
AACAGGAGAGCAGCACTCCATTCAAGGACCCAACTTCCCATCCTTCAGACCTCAAGGAACTGTCCCCTGC
AGGCCAAGGCACCTCTCGGCCTTTGCCTACCCTCTCTAGTTGTCAGTCTATGGCAGCTACTGACATGCCA
GTCTGCTCCCTGTCTCTTGCATCAAGCACAAACGAACCCCAGGAGCTTCCAGATCCCAGAGACGCCCCAA
GAGAAGGTTCTTTCAGGCTTGATGGAAACCAAAGTGAGTTTGGCTTAGGAAATTCTCTCCCAGCCTCTCC
TTTGCACAGCTGCCGGAACCTGGAGAAGGAGGAGTCTGAACTCCATCTGTATATAATTTCTGCAACCTCA
TCGATATTTCTGCACCTAAAGAGCTCGTGGAACAACTACATTATAAGAGCCACTCTTTTACAGGATCCTC
TATGTGCCAGCGAGCACAATGATGTCATCGGGAAGCCAAAGCCATACAGATCTGAGGAGAAAATTAAGCA
CTTTTGTCAGTTGAAGTCTGAACTTTTTCTTAAAGACAATACTTTGAGGAAGATACTGTGTTTAATTACC
GAACTTAGAGTGGCAGCCCAGAGAAACTTCATCCTGAAAAGGCTTTTCTGGAAAACCAGTGAGCTTTTCT
ACTTCCTAGTGAACAAACTTCACGAGTATCTGCCAGAGTCGAGGGACAAGCATGCTCTTCAAAACAAAAG
CCAGAGGGCTGATGAGCTGATGGCGTGCATTGAAATTATACAGACGCTAGGGCTGATGTTCAGAGAAACA
GAAATTGAATCGTCACGATTGAACACACTGGCAGCTAAGAAGGGAACACTGTTTAATCTCTTAGTAATTC
TAATTAGCAAGCCGAAGGTTCCAAAGTCCTGCTCCAAGTCTGATGCCCAGCCGGTGGCTGATCCAACCTC
AGCCGAAGTGTTTTTCGACAGTCAGTTACAGAAGCTCACCCTGGAGTACACGGACACTGCCACAGCTCTG
CTCTACGAGATTCTGCTCATCTTTCAGCAGGGAAATCTTGGATTGGGATCCACGAAGTTCGCTATTAGCT
GGATGATGTCCTTTCTGCAAAGCTGTCCTCCCATCATGGCGTTTGTGGCCAGGATCGTGGAGGGAGTGGT
GAGAGGGCTCTCAGCTTCATTCCAGCTGCTGACTCCCTGCCAAGCAGTTCTGTTGTACCAGCAGTTTTAC
ATCCTCAGGAGCTGCCTGCAGCATAGCAAGGCTCTGGCCGAGTATATTAGGAATGACCACCGTGAGGAGT
TCAGGTACTTTATTCACATGCCGGCCTTGGAGCAGAGGCTCCCAGGCTGCTACCCCATTACAGAGCCCAC
CACTCAGCTCTGTCATGAAGTTCTGCAGTTGATTGAGCAGAAACAGTGTGCAAAATGTTAG

Translation (626 aa):
MASPARSGFPGRTNSRLDAFLRRHLPPEVYDAVRAYEPCIVVSDAEKHTFKYVVLSDRLIYLTENPPKSI
RRVVALRDVVAIDLIDDYPEFLSSPDREINQHIRIVYSSTVLKKERGKSKGVGKFLFPAHHSTANKKVKQ
ENNGPTFWRRKVSRTLNESSLRSQQESSTPFKDPTSHPSDLKELSPAGQGTSRPLPTLSSCQSMAATDMP
VCSLSLASSTNEPQELPDPRDAPREGSFRLDGNQSEFGLGNSLPASPLHSCRNLEKEESELHLYIISATS
SIFLHLKSSWNNYIIRATLLQDPLCASEHNDVIGKPKPYRSEEKIKHFCQLKSELFLKDNTLRKILCLIT
ELRVAAQRNFILKRLFWKTSELFYFLVNKLHEYLPESRDKHALQNKSQRADELMACIEIIQTLGLMFRET
EIESSRLNTLAAKKGTLFNLLVILISKPKVPKSCSKSDAQPVADPTSAEVFFDSQLQKLTLEYTDTATAL
LYEILLIFQQGNLGLGSTKFAISWMMSFLQSCPPIMAFVARIVEGVVRGLSASFQLLTPCQAVLLYQQFY
ILRSCLQHSKALAEYIRNDHREEFRYFIHMPALEQRLPGCYPITEPTTQLCHEVLQLIEQKQCAKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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