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Report for CCDS36034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36034.1 Public Mus musculus 10 Tmpo 23 108 98 CCDS HistoryNCBI Gene:21917Re-query CCDS DB by CCDS ID:36034.1Re-query CCDS DB by GeneID:21917See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36034.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092219.13 ENSMUSP00000089864.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092219.13Link to Ensembl Protein Viewer:ENSMUSP00000089864.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000092219Re-query CCDS DB by Protein ID:ENSMUSP00000089864
Original member NCBI NM_001080130.2 NP_001073599.1 Updated not alive Link to Nucleotide Sequence:NM_001080130.2Link to Protein Sequence:NP_001073599.1Re-query CCDS DB by Nucleotide ID:NM_001080130Re-query CCDS DB by Protein ID:NP_001073599
Current member NCBI NM_001080130.3 NP_001073599.1 Accepted alive Link to Nucleotide Sequence:NM_001080130.3Link to Protein Sequence:NP_001073599.1Re-query CCDS DB by Nucleotide ID:NM_001080130Re-query CCDS DB by Protein ID:NP_001073599Link to BLAST:NP_001073599.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073599.1 412 Q61029-3 412 100% 0 0

Chromosomal Locations for CCDS 36034.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 91149476 91149758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91151709 91151797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91152628 91152738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91153085 91153180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91158748 91158845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91164043 91164201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91165943 91166069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91171038 91171313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGCCGGAGTTCCTAGAGGACCCTTCGGTCCTGACCAAAGACAAGTTGAAGAGCGAGTTGGTCGCCAACA
ACGTGACGCTCCCGGCCGGCGAGCAGCGCAAGGACGTGTACGTGCAGCTCTACCTGCAGCACCTCACGGC
GCGCAACCGGCCGCCGCTCGCCGCGGGAGCCAACAGCAAAGGGCCGCCCGACTTCTCGAGCGACGAGGAG
CGCGAGCCCACGCCGGTGCTCGGCTCCGGGGCCTCCGTGGGTCGCGGCCGCGGCGCCGTCGGCAGGAAAG
CCACAAAGAAAACTGATAAGCCCAGGCTAGAAGATAAAGATGATCTGGATGTGACAGAGCTCTCTAATGA
AGAACTTCTGGATCAGCTTGTAAGATATGGAGTGAATCCTGGTCCCATTGTGGGAACAACCAGGAAGCTA
TATGAGAAGAAGCTGTTGAAGCTGAGGGAGCAGGGAACTGAATCGAGATCCTCTACTCCTCTTCCAACAG
TCTCTTCCTCTGCAGAAAACACAAGGCAGAATGGAAGTAACGACTCTGACAGATACAGCGACAATGATGA
AGACTCTAAAATAGAGCTGAAGCTTGAGAAGAGGGAGCCGCTAAAGGGCAGAGCCAAGACGCCAGTCACA
CTGAAGCAGAGAAGGACTGAGCACAATCAGGTGGAAACTTCACAGCATTTTCGTATAGATGGTGCAGTAA
TTTCAGAGAGTACTCCCATAGCTGAAACTATAAAGGCTTCAAGCAACGAATCCTTAGTGGCCAATAGGTT
GACTGGAAATTTCAAGCATGCATCTTCTATTCTGCCAATCACTGAATTCTCAGACATAACCAGAAGAACA
CCAAAGAAACCATTGACAAGAGCTGAAGTGGGAGAAAAAACAGAGGAGCGAAGAGTAGACAGGGATATTC
TTAAGGAAATGTTCCCCTACGAAGCCTCCACTCCGACGGGAATCAGTGCTAGCTGCCGCAGACCAATCAA
AGGTGCTGCAGGCCGGCCGCTCGAGCTCAGTGACTTCAGGATGGAAGAGTCGTTCTCATCTAAGTACGTC
CCGAAGTATGCTCCCTTGGCAGATGTCAAGTCAGAAAAGACAAAGAAGAGACGCTCCGTTCCCATGTGGA
TAAAAATGTTGCTGTTTGCCCTTGTGGCCGTGTTTTTGTTTTTGGTCTATCAAGCTATGGAAACCAACCA
AGGAAATCCCTTCACTAATTTTCTTCAAGATACTAAAATATCCAACTGA

Translation (412 aa):
MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLAAGANSKGPPDFSSDEE
REPTPVLGSGASVGRGRGAVGRKATKKTDKPRLEDKDDLDVTELSNEELLDQLVRYGVNPGPIVGTTRKL
YEKKLLKLREQGTESRSSTPLPTVSSSAENTRQNGSNDSDRYSDNDEDSKIELKLEKREPLKGRAKTPVT
LKQRRTEHNQVETSQHFRIDGAVISESTPIAETIKASSNESLVANRLTGNFKHASSILPITEFSDITRRT
PKKPLTRAEVGEKTEERRVDRDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYV
PKYAPLADVKSEKTKKRRSVPMWIKMLLFALVAVFLFLVYQAMETNQGNPFTNFLQDTKISN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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