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Report for CCDS35717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35717.1 Public Mus musculus 1 Ppp1r12b 23 108 98 CCDS HistoryNCBI Gene:329251Re-query CCDS DB by CCDS ID:35717.1Re-query CCDS DB by GeneID:329251See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086444.5 ENSMUSP00000083633.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086444.5Link to Ensembl Protein Viewer:ENSMUSP00000083633.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086444Re-query CCDS DB by Protein ID:ENSMUSP00000083633
Original member Current member EBI ENSMUST00000168381.7 ENSMUSP00000131406.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168381.7Link to Ensembl Protein Viewer:ENSMUSP00000131406.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168381Re-query CCDS DB by Protein ID:ENSMUSP00000131406
Original member Current member NCBI NM_001081307.2 NP_001074776.1 Accepted alive Link to Nucleotide Sequence:NM_001081307.2Link to Protein Sequence:NP_001074776.1Re-query CCDS DB by Nucleotide ID:NM_001081307Re-query CCDS DB by Protein ID:NP_001074776Link to BLAST:NP_001074776.1

Chromosomal Locations for CCDS 35717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 134765943 134766077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134771998 134772048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134773426 134773479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134776376 134776480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134777315 134777459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134782151 134782167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134834435 134834476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134835785 134835897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134835978 134836167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134837853 134838041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134842643 134842733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134865778 134865960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134872807 134872932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134873939 134874021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134875965 134876165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134879633 134879745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134886423 134886562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134887275 134887354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134890756 134890830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134892158 134892302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134893350 134893509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134896343 134896461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134902378 134902508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 134955492 134955782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2979 nt):
ATGGCGGAGCTGGAGCACCTGGGAGGGAAGCGAGCAGAGTCGGCGCGAGCGCGGCGGGCTGAGCAGCTGC
GGCGCTGGCGAGGCTCGCTGACAGAGCAGGAGCCCGCGGAGCGACAGGGCGCGGGGCGCCAGCTGCAGAC
CAGACGCGGGAGCCCCAGGGTCCGCTTCGAAGACGGTGCGGTCTTTCTAGCTGCCTGCTCCAGCGGGGAC
ACGGACGAGGTGAAAAAGCTTCTGGCAAGAGGTGCGGACATCAACACGGTCAACGTGGACGGCTTGACAG
CCCTGCACCAGGCCTGTATTGATGAAAATTTGGACATGGTGAAGTTTCTGGTGGAGAACAGAGCCAATGT
AAACCAGCAGGACAACGAGGGCTGGACACCCCTGCATGCAGCAGCTTCCTGTGGTTATCTCAACATAGCA
GAGTATTTTATTAGCCATGGAGCCAGTGTGGGTATTGTGAACAGTGAAGGTGAAGTTCCTTCTGACCTTG
CAGAGGAGCCAGCCATGAAAGACCTTCTTCTGGAACAAGTAAAGAAACAAGGCGTTGATCTAGAGCAGTC
AAGGAAGGAGGAAGAACAGCAGATGTTGCAGGATGCCCGCCAGTGGCTCAACAGCGGAAGAATAGAAGAT
GTGAGGCAGGCTCGCTCAGGGGCCACTGCCCTGCATGTAGCTGCTGCCAAGGGTTACTCTGAAGTCCTCA
GGCTTCTCATTCAGGCTGGCTATGAACTCAATGTTCAGGATCATGACGGCTGGACTCCTCTTCATGCAGC
TGCACACTGGGGAGTAAAAGAGGCTTGCTCCATCCTGGCAGAAGCACTCTGTGACATGGATATCCGGAAC
AAACTGGGCCAGACGCCATTTGATGTGGCTGATGAAGGTCTCGTGGAGCACTTGGAGATGCTTCAGAAGA
AGCAAGATGTGCTTCGAAGTGAAAAGGAGACACGGAATAAGCTCATCGAGTCAGACCTGAATAGCAAGTT
TCAGAGTGGACTCTTTAAGAACAAAGAGAAGATGCTTTATGAAGAAGAGATCCCGAAGTCCCAAGACACA
GAGGAAGAAAACAAAGAGTCCAGCAGCTCCAGCTCAGAGGAGGAGGAAGGGGAAGATGAAGTTTCTGAAT
CAGAGACTGAGAAGGAGGCAGATAAAAAGCCAGAAGCCACTGTCAACCATTCCAACTCTGAAATCAAGAG
TCGGATCATGGAGCAGATCCCAGCCCCAGCTCAGAACACCTTCTCTGCCTCTTCAGCTAGGAGACTGTCC
AGTCTTTTCAACAAGGCAGAAGAGCCTAAAGATGAATCTCCCTCTTCCTGGAGACTGGGGCTCAGAAAAA
CTGGTAGCCACAATATGCTGAGTGAAGTGGCCAATTCCAGGGAGGCCCTTAGGGATCGAGGTTCTTCCAT
CTACCGGTCCTCCTCAAGCCCTCGGATCTCTGCTTTGCTGGATGACAAAGATAAGGAAAGAGAAAACAAA
AGCTATTTCAGTATGCTAGTACCCCGGAGGCTCAGCAGCACAAGTGACATTGAAGAAAAGGAGAACAGAG
AGTCAGCTGTTAATCTAGTAAGGAGTGGCTCCCATACCAGGCAGCTGTGGAGGGATGAAGCAAAGGGAAG
TGAAACCCCACAGACAATCGCTCCTTCCACTTACACGTCAACTTACTTGAAAAGGACTCCTTACAAGTCC
CAGGCTGACTCAACAGCAGAGAAAACAGCAGACAGTGTCTCCTCCAGCACCCCACTGTGTGTGATCACCA
ACCGTCCTGCGCCAAGTACTGCCAATGGGGTTCCAGCTGCCACAGTGTTCTCCTCCGCTGGAACAGACCC
CTCTGTGGAGGCCCGGGAGAAGAGGAGGTCTTATCTAACTCCTGTACGGGATGAGGAGGCAGAGTCATTA
CGGAAAGCACGCTCCAGACAAGCTCGGCAGACGCGAAGGTCTACTCAAGGTGTTACCCTAACAGACCTCC
AAGAAGCAGAAAAGACTTTCAGCCGTTCGAGGGCAGAGAGACAAGCCCAGGAGCAGCCTGGGGAGAAGCT
TGAAGATCCTGGTGGCCTCGAAGGAAGCACCAAGAAGCAGGAGCCATCGGCAGCCCCAACAAAGGGAGCT
GGCGAGGGCAGAAGTCTGGAGGAAGAGCCTATCTATCATCGCCTAAGGTATCCAACTCAACCAGACAAAC
CCACGACACCAGTTTCTCCTTCTGCATCAAGACCCTCACTCTACACTGGCTCTCATCTACTGCGCACAAG
CAGAGCTTCAGGCCCTGACTCTGAGAATTCAGAGACTAGCACACACGCCACAGCGGCAAAGGAAATGGAC
ACGAGTGAGAAAGGAGAAGCTGATTTGGATGATCAGTCCTCTAACAGGCTGTCTGTCCGGGAACGGAGAA
GAGCTAAAGATAGGCGAAGAGGCACCGGCATTAACTTCTGGACAAATGACGAAGATGAAACAGATGTCTC
TGAAGAGGTCAAAGAAGCTTTGCATGAAAGACTTTCTAGGTTGGAGTCAGGAGGCACCAATCCGACCAGC
AGCGATTCTTACAGTGACCGTGCCTCAGCAAGAGCCCGTCGGGAGGCCAGGGAGGCTCGTCTAGCCAGCC
TGACCAGCCGGGTAGAAGAGGACAGCAACAGGGATTATAAGAAACTCTACGAGAGTGCCCTGACCGAAAA
CCAAAAGCTGAAAACAAAGCTTCAGGAGGCCCAGCTAGAGCTTGCCGATATAAAAGCCAAGCTTGAGAAG
ATGGCCCAGCAGAAACAAGAGAAGACCTCTGACCGGTCCTCGGTGCTGGAGGTGGAGAAGCGGGAGAGGC
GAGCACTGGAACGGAAAATGTCGGAAATGGAAGAAGAGATGAAGAACCTTCACCAGCTAAAACAGATTCA
AACCTTGAAGCAGATGAACGAACAACTGCAGGCTGAGAACAGGGCCCTGACCCGAGTGGTGGCCAGACTC
TCCAAGTCCATCGAGTCCTCCGACACCCAGGAGCTCTAG

Translation (992 aa):
MAELEHLGGKRAESARARRAEQLRRWRGSLTEQEPAERQGAGRQLQTRRGSPRVRFEDGAVFLAACSSGD
TDEVKKLLARGADINTVNVDGLTALHQACIDENLDMVKFLVENRANVNQQDNEGWTPLHAAASCGYLNIA
EYFISHGASVGIVNSEGEVPSDLAEEPAMKDLLLEQVKKQGVDLEQSRKEEEQQMLQDARQWLNSGRIED
VRQARSGATALHVAAAKGYSEVLRLLIQAGYELNVQDHDGWTPLHAAAHWGVKEACSILAEALCDMDIRN
KLGQTPFDVADEGLVEHLEMLQKKQDVLRSEKETRNKLIESDLNSKFQSGLFKNKEKMLYEEEIPKSQDT
EEENKESSSSSSEEEEGEDEVSESETEKEADKKPEATVNHSNSEIKSRIMEQIPAPAQNTFSASSARRLS
SLFNKAEEPKDESPSSWRLGLRKTGSHNMLSEVANSREALRDRGSSIYRSSSSPRISALLDDKDKERENK
SYFSMLVPRRLSSTSDIEEKENRESAVNLVRSGSHTRQLWRDEAKGSETPQTIAPSTYTSTYLKRTPYKS
QADSTAEKTADSVSSSTPLCVITNRPAPSTANGVPAATVFSSAGTDPSVEAREKRRSYLTPVRDEEAESL
RKARSRQARQTRRSTQGVTLTDLQEAEKTFSRSRAERQAQEQPGEKLEDPGGLEGSTKKQEPSAAPTKGA
GEGRSLEEEPIYHRLRYPTQPDKPTTPVSPSASRPSLYTGSHLLRTSRASGPDSENSETSTHATAAKEMD
TSEKGEADLDDQSSNRLSVRERRRAKDRRRGTGINFWTNDEDETDVSEEVKEALHERLSRLESGGTNPTS
SDSYSDRASARARREAREARLASLTSRVEEDSNRDYKKLYESALTENQKLKTKLQEAQLELADIKAKLEK
MAQQKQEKTSDRSSVLEVEKRERRALERKMSEMEEEMKNLHQLKQIQTLKQMNEQLQAENRALTRVVARL
SKSIESSDTQEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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