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Report for CCDS35080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35080.1 Public Homo sapiens 9 TBC1D2 24 110 108 CCDS HistoryNCBI Gene:55357Re-query CCDS DB by CCDS ID:35080.1Re-query CCDS DB by GeneID:55357See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35080.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375066.6 ENSP00000364207.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375066.6Link to Ensembl Protein Viewer:ENSP00000364207.5Re-query CCDS DB by Nucleotide ID:ENST00000375066Re-query CCDS DB by Protein ID:ENSP00000364207
Original member Current member NCBI NM_018421.4 NP_060891.3 Accepted alive Link to Nucleotide Sequence:NM_018421.4Link to Protein Sequence:NP_060891.3Re-query CCDS DB by Nucleotide ID:NM_018421Re-query CCDS DB by Protein ID:NP_060891Link to BLAST:NP_060891.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060891.3 917 Q9BYX2-2 917 100% 0 0

Chromosomal Locations for CCDS 35080.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 98199381 98199588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98200253 98200341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98201479 98201664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98203288 98203408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98208668 98209144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98210656 98210843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98213108 98213218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98220833 98221228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98228952 98229148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98233416 98233549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98243994 98244129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98251785 98251926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98255173 98255541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2754 nt):
ATGGAGGGCGCTGGGGAGAACGCCCCGGAGTCCAGCTCCTCTGCCCCTGGGTCCGAAGAGTCTGCCAGGG
ATCCACAGGTGCCGCCTCCGGAGGAAGAATCGGGGGACTGCGCCCGGTCCCTGGAGGCGGTCCCCAAGAA
ACTCTGTGGGTATTTAAGTAAGTTCGGCGGCAAAGGGCCCATCCGGGGCTGGAAATCCCGCTGGTTCTTC
TACGACGAAAGGAAATGTCAGCTGTATTACTCGCGGACCGCTCAGGATGCCAATCCCTTGGACAGCATCG
ACCTCTCCAGTGCAGTGTTTGACTGTAAGGCGGACGCTGAGGAGGGGATCTTCGAAATCAAGACTCCCAG
CCGGGTTATTACCCTGAAGGCCGCCACCAAGCAAGCGATGCTGTACTGGCTGCAGCAGCTGCAGATGAAG
CGCTGGGAATTCCACAACAGCCCGCCGGCACCTCCTGCCACCCCTGATGCCGCCCTGGCTGGGAATGGGC
CCGTCCTGCACCTCGAGCTAGGGCAAGAAGAGGCAGAGCTGGAGGAGTTCCTGTGCCCTGTGAAAACACC
CCCTGGGCTAGTGGGCGTGGCAGCTGCCTTGCAGCCCTTCCCTGCCCTTCAGAATATTTCCCTCAAGCAC
CTGGGGACTGAAATACAGAACACAATGCACAACATCCGTGGCAACAAGCAGGCCCAGGGAACAGGCCATG
AACCTCCAGGGGAAGATTCTCCACAGAGTGGGGAGCCTCAGAGGGAGGAGCAGCCCTTGGCCTCTGACGC
CAGCACCCCAGGGAGAGAGCCAGAGGATTCTCCAAAGCCTGCACCCAAGCCTTCTCTGACCATCAGTTTC
GCTCAGAAAGCCAAGCGCCAGAACAACACCTTCCCATTCTTTTCTGAAGGAATCACACGGAACCGAACTG
CCCAGGAGAAAGTGGCAGCCTTGGAGCAACAGGTTCTGATGCTCACCAAGGAGTTAAAGTCTCAGAAGGA
GCTAGTGAAGATCCTGCACAAGGCACTGGAGGCCGCCCAGCAGGAGAAGCGGGCGTCCAGCGCATACCTG
GCGGCGGCTGAGGACAAGGACCGGCTGGAGCTGGTGCGGCACAAAGTGCGGCAGATCGCGGAGCTGGGCC
GGCGGGTGGAGGCCCTGGAGCAGGAGCGGGAGAGCCTGGCGCACACAGCGAGCCTGCGGGAGCAGCAGGT
GCAGGAGCTACAGCAGCACGTGCAGCTGCTTATGGACAAGAACCACGCCAAGCAGCAGGTCATCTGCAAG
CTCTCTGAGAAGGTCACCCAGGACTTCACGCACCCCCCTGACCAGTCTCCTTTGCGCCCCGACGCTGCCA
ACAGGGACTTCCTGAGCCAGCAGGGGAAGATAGAGCACCTGAAGGATGACATGGAAGCTTACCGGACCCA
GAACTGCTTCCTCAACTCCGAGATCCACCAGGTCACAAAGATCTGGAGAAAGGTGGCTGAGAAGGAGAAG
GCCCTTCTGACGAAGTGCGCCTACCTCCAAGCCAGAAACTGCCAGGTGGAAAGCAAGTACCTGGCCGGTC
TGAGAAGGCTGCAGGAGGCCCTGGGGGACGAAGCCAGCGAGTGCTCAGAGCTGCTGAGGCAGCTTGTCCA
GGAGGCACTGCAGTGGGAAGCTGGGGAGGCCTCATCTGACAGCATCGAGCTGAGCCCCATCAGTAAGTAT
GATGAGTACGGCTTCCTGACGGTGCCCGACTATGAGGTGGAAGACCTGAAGCTGCTGGCCAAGATCCAGG
CATTGGAGTCACGATCCCACCACCTGCTGGGCCTCGAGGCTGTGGATCGGCCGCTGAGGGAGCGCTGGGC
TGCCCTGGGCGATCTTGTGCCCTCAGCCGAGCTCAAGCAGCTACTGCGGGCAGGAGTACCCCGTGAACAC
CGGCCTCGTGTCTGGAGGTGGCTGGTCCACCTCCGTGTCCAGCACCTGCACACTCCAGGCTGCTACCAGG
AACTGCTGAGCCGGGGCCAGGCCCGCGAGCACCCTGCTGCCCGCCAGATTGAGCTGGACCTGAACCGGAC
CTTCCCCAACAACAAACACTTCACCTGCCCCACCTCCAGCTTCCCCGACAAGCTCCGCCGGGTGCTGCTG
GCCTTCTCCTGGCAGAACCCCACCATCGGCTACTGCCAGGGCCTGAACAGGCTGGCGGCCATTGCCCTGC
TGGTCCTAGAGGAGGAGGAGAGCGCCTTCTGGTGCCTGGTGGCCATTGTGGAGACCATCATGCCCGCTGA
TTACTACTGCAACACGCTGACGGCATCCCAGGTGGACCAGCGGGTGCTCCAGGACCTGCTCTCGGAGAAG
CTGCCCAGGCTGATGGCCCATCTGGGGCAGCACCACGTGGATCTCTCCCTCGTCACCTTCAACTGGTTCC
TCGTGGTCTTTGCGGACAGTCTCATTAGCAACATCCTCCTTCGGGTCTGGGATGCCTTCCTGTACGAGGG
GACGAAGTACAACGAGAAGGAGATCTTGAGGCTACAGAATGGCCTGGAAATCTACCAGTACCTGCGCTTC
TTCACCAAGACCATCTCCAACAGCCGGAAGCTGATGAACATCGCCTTCAATGACATGAACCCCTTCCGCA
TGAAACAGCTGCGGCAGCTGCGCATGGTCCACCGGGAGCGGCTGGAGGCTGAGCTGCGGGAGCTGGAGCA
GCTTAAGGCAGAGTACCTGGAGAGGCGGGCATCCCGGCGCAGAGCTGTGTCCGAGGGCTGTGCCAGCGAG
GACGAGGTGGAGGGGGAAGCCTGA

Translation (917 aa):
MEGAGENAPESSSSAPGSEESARDPQVPPPEEESGDCARSLEAVPKKLCGYLSKFGGKGPIRGWKSRWFF
YDERKCQLYYSRTAQDANPLDSIDLSSAVFDCKADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMK
RWEFHNSPPAPPATPDAALAGNGPVLHLELGQEEAELEEFLCPVKTPPGLVGVAAALQPFPALQNISLKH
LGTEIQNTMHNIRGNKQAQGTGHEPPGEDSPQSGEPQREEQPLASDASTPGREPEDSPKPAPKPSLTISF
AQKAKRQNNTFPFFSEGITRNRTAQEKVAALEQQVLMLTKELKSQKELVKILHKALEAAQQEKRASSAYL
AAAEDKDRLELVRHKVRQIAELGRRVEALEQERESLAHTASLREQQVQELQQHVQLLMDKNHAKQQVICK
LSEKVTQDFTHPPDQSPLRPDAANRDFLSQQGKIEHLKDDMEAYRTQNCFLNSEIHQVTKIWRKVAEKEK
ALLTKCAYLQARNCQVESKYLAGLRRLQEALGDEASECSELLRQLVQEALQWEAGEASSDSIELSPISKY
DEYGFLTVPDYEVEDLKLLAKIQALESRSHHLLGLEAVDRPLRERWAALGDLVPSAELKQLLRAGVPREH
RPRVWRWLVHLRVQHLHTPGCYQELLSRGQAREHPAARQIELDLNRTFPNNKHFTCPTSSFPDKLRRVLL
AFSWQNPTIGYCQGLNRLAAIALLVLEEEESAFWCLVAIVETIMPADYYCNTLTASQVDQRVLQDLLSEK
LPRLMAHLGQHHVDLSLVTFNWFLVVFADSLISNILLRVWDAFLYEGTKYNEKEILRLQNGLEIYQYLRF
FTKTISNSRKLMNIAFNDMNPFRMKQLRQLRMVHRERLEAELRELEQLKAEYLERRASRRRAVSEGCASE
DEVEGEA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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