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Report for CCDS35078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35078.1 Public Homo sapiens 9 FOXE1 24 110 108 CCDS HistoryNCBI Gene:2304Re-query CCDS DB by CCDS ID:35078.1Re-query CCDS DB by GeneID:2304See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35078.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375123.5 ENSP00000364265.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375123.5Link to Ensembl Protein Viewer:ENSP00000364265.3Re-query CCDS DB by Nucleotide ID:ENST00000375123Re-query CCDS DB by Protein ID:ENSP00000364265
Original member Current member NCBI NM_004473.4 NP_004464.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004473.4Link to Protein Sequence:NP_004464.2Re-query CCDS DB by Nucleotide ID:NM_004473Re-query CCDS DB by Protein ID:NP_004464Link to BLAST:NP_004464.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004464.2 373 O00358 373 100% 0 0

Chromosomal Locations for CCDS 35078.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 97853915 97855036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGACTGCCGAGAGCGGGCCGCCGCCGCCGCAGCCGGAGGTGCTGGCTACCGTGAAGGAAGAGCGCGGCG
AGACGGCAGCAGGGGCCGGGGTCCCAGGGGAGGCCACGGGCCGCGGGGCGGGCGGGCGGCGCCGCAAGCG
CCCCCTGCAGCGCGGGAAGCCGCCCTACAGCTACATCGCGCTCATCGCCATGGCCATCGCGCACGCGCCC
GAGCGCCGCCTCACGCTGGGCGGCATCTACAAGTTCATCACCGAGCGCTTCCCCTTCTACCGCGACAACC
CCAAAAAGTGGCAGAACAGCATCCGCCACAACCTCACACTCAACGACTGCTTCCTCAAGATCCCGCGCGA
GGCCGGCCGCCCGGGTAAGGGCAACTACTGGGCGCTTGACCCCAACGCGGAGGACATGTTCGAGAGCGGC
AGCTTCCTGCGCCGCCGCAAGCGCTTCAAGCGCTCGGACCTCTCCACCTACCCGGCTTACATGCACGACG
CGGCGGCTGCCGCAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCATCTTCCCAGGCGCGGTGCCCGC
CGCGCGCCCCCCCTACCCGGGCGCCGTCTATGCAGGCTACGCGCCGCCGTCGCTGGCCGCGCCGCCTCCA
GTCTACTACCCCGCGGCGTCGCCCGGCCCTTGCCGCGTCTTCGGCCTGGTTCCTGAGCGGCCGCTCAGCC
CAGAGCTGGGGCCCGCACCGTCGGGGCCCGGCGGCTCTTGCGCCTTTGCCTCCGCCGGCGCCCCCGCTAC
CACCACCGGCTACCAGCCCGCAGGCTGCACCGGGGCCCGGCCGGCCAACCCCTCCGCCTATGCGGCTGCC
TACGCGGGCCCCGACGGCGCGTACCCGCAGGGCGCCGGCAGTGCGATCTTTGCCGCTGCTGGCCGCCTGG
CGGGACCCGCTTCGCCCCCAGCGGGCGGCAGCAGTGGCGGCGTGGAGACCACGGTGGACTTCTACGGGCG
CACGTCGCCCGGCCAGTTCGGAGCGCTGGGAGCCTGCTACAACCCTGGCGGGCAGCTCGGAGGGGCCAGT
GCAGGCGCCTACCATGCTCGCCATGCTGCCGCTTATCCCGGTGGGATAGATCGGTTCGTGTCCGCCATGT
GA

Translation (373 aa):
MTAESGPPPPQPEVLATVKEERGETAAGAGVPGEATGRGAGGRRRKRPLQRGKPPYSYIALIAMAIAHAP
ERRLTLGGIYKFITERFPFYRDNPKKWQNSIRHNLTLNDCFLKIPREAGRPGKGNYWALDPNAEDMFESG
SFLRRRKRFKRSDLSTYPAYMHDAAAAAAAAAAAAAAAAIFPGAVPAARPPYPGAVYAGYAPPSLAAPPP
VYYPAASPGPCRVFGLVPERPLSPELGPAPSGPGGSCAFASAGAPATTTGYQPAGCTGARPANPSAYAAA
YAGPDGAYPQGAGSAIFAAAGRLAGPASPPAGGSSGGVETTVDFYGRTSPGQFGALGACYNPGGQLGGAS
AGAYHARHAAAYPGGIDRFVSAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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