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Report for CCDS34858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34858.1 Public Homo sapiens 8 POLR3D 24 110 108 CCDS HistoryNCBI Gene:661Re-query CCDS DB by CCDS ID:34858.1Re-query CCDS DB by GeneID:661See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34858.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306433.9 ENSP00000303088.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306433.9Link to Ensembl Protein Viewer:ENSP00000303088.4Re-query CCDS DB by Nucleotide ID:ENST00000306433Re-query CCDS DB by Protein ID:ENSP00000303088
Original member Current member EBI ENST00000397802.8 ENSP00000380904.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397802.8Link to Ensembl Protein Viewer:ENSP00000380904.3Re-query CCDS DB by Nucleotide ID:ENST00000397802Re-query CCDS DB by Protein ID:ENSP00000380904
Original member Current member NCBI NM_001722.3 NP_001713.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001722.3Link to Protein Sequence:NP_001713.2Re-query CCDS DB by Nucleotide ID:NM_001722Re-query CCDS DB by Protein ID:NP_001713Link to BLAST:NP_001713.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001713.2 398 P05423 398 100% 0 0

Chromosomal Locations for CCDS 34858.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22245450 22245614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22247221 22247264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22247857 22248008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22248154 22248278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22248481 22248649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22249044 22249309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22250075 22250227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22250396 22250518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGTCGGAAGGAAACGCCGCCGGCGAGCCCAGCACGCCGGGAGGGCCCCGACCTCTCCTGACTGGGGCCC
GGGGGCTCATCGGGCGGCGGCCGGCGCCTCCCCTCACCCCCGGCCGCCTTCCCTCCATCCGTTCCAGGGA
CCTCACCCTCGGGGGAGTCAAGAAGAAAACCTTCACCCCAAATATCATCAGTCGGAAGATCAAGGAAGAG
CCCAAGGAAGAAGTAACTGTCAAGAAGGAGAAGCGTGAAAGGGACAGAGACCGACAACGAGAGGGGCATG
GACGAGGGCGAGGCCGTCCAGAAGTGATCCAGTCTCACTCCATCTTTGAGCAGGGCCCAGCTGAAATGAT
GAAGAAAAAAGGGAACTGGGATAAGACAGTGGATGTGTCAGACATGGGACCTTCTCATATCATCAACATC
AAAAAAGAGAAGAGAGAGACAGACGAAGAAACTAAACAGATCTTGCGTATGCTGGAGAAGGACGATTTCC
TCGATGACCCCGGCCTGAGGAACGACACTCGAAATATGCCTGTGCAGCTGCCGCTGGCTCACTCAGGATG
GCTTTTTAAGGAAGAAAATGACGAACCAGATGTTAAACCTTGGCTGGCTGGCCCCAAGGAAGAGGACATG
GAGGTGGACATACCTGCTGTGAAAGTGAAAGAGGAGCCACGAGATGAGGAGGAAGAGGCCAAGATGAAGG
CTCCTCCCAAAGCAGCCAGGAAGACTCCAGGCCTCCCGAAGGATGTATCTGTGGCAGAGCTGCTGAGGGA
GCTGAGCCTCACCAAGGAAGAGGAACTGCTGTTTCTGCAGCTGCCAGACACCCTCCCTGGCCAGCCACCC
ACCCAGGACATCAAGCCTATCAAGACAGAGGTGCAGGGCGAGGACGGACAGGTGGTGCTCATCAAGCAGG
AGAAAGACCGAGAAGCCAAATTGGCAGAGAATGCTTGTACCCTGGCTGACCTGACAGAGGGTCAGGTTGG
CAAGCTACTCATCCGCAAGTCTGGAAGGGTGCAACTCCTCTTGGGCAAGGTGACTCTGGACGTGACCATG
GGAACTGCCTGCTCCTTCCTGCAGGAGCTGGTGTCCGTGGGCCTTGGAGACAGTAGGACAGGGGAGATGA
CAGTCCTGGGACACGTGAAGCACAAACTTGTATGTTCCCCTGATTTTGAATCCCTCTTGGATCACAAACA
CCGGTAA

Translation (398 aa):
MSEGNAAGEPSTPGGPRPLLTGARGLIGRRPAPPLTPGRLPSIRSRDLTLGGVKKKTFTPNIISRKIKEE
PKEEVTVKKEKRERDRDRQREGHGRGRGRPEVIQSHSIFEQGPAEMMKKKGNWDKTVDVSDMGPSHIINI
KKEKRETDEETKQILRMLEKDDFLDDPGLRNDTRNMPVQLPLAHSGWLFKEENDEPDVKPWLAGPKEEDM
EVDIPAVKVKEEPRDEEEEAKMKAPPKAARKTPGLPKDVSVAELLRELSLTKEEELLFLQLPDTLPGQPP
TQDIKPIKTEVQGEDGQVVLIKQEKDREAKLAENACTLADLTEGQVGKLLIRKSGRVQLLLGKVTLDVTM
GTACSFLQELVSVGLGDSRTGEMTVLGHVKHKLVCSPDFESLLDHKHR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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