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Report for CCDS34788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34788.1 Public Homo sapiens 7 MNX1 22 109 92 CCDS HistoryNCBI Gene:3110Re-query CCDS DB by CCDS ID:34788.1Re-query CCDS DB by GeneID:3110See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENST00000252971.10 ENSP00000252971.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000252971.10Link to Ensembl Protein Viewer:ENSP00000252971.5Re-query CCDS DB by Nucleotide ID:ENST00000252971Re-query CCDS DB by Protein ID:ENSP00000252971
Original member Current member NCBI NM_005515.3 NP_005506.3 Accepted alive Link to Nucleotide Sequence:NM_005515.3Link to Protein Sequence:NP_005506.3Re-query CCDS DB by Nucleotide ID:NM_005515Re-query CCDS DB by Protein ID:NP_005506Link to BLAST:NP_005506.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005506.3 401 P50219-1 401 100% 0 0

Chromosomal Locations for CCDS 34788.1

Assembly GRCh38.p12 (GCF_000001405.38)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 157005520 157005873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 157006479 157006639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 157009660 157010350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGGAAAAATCCAAAAATTTCCGCATCGACGCCCTGCTGGCGGTGGACCCCCCACGAGCCGCCTCTGCGC
AG
AGCGCGCCGCTGGCCTTGGTCACGTCGCTCGCCGCCGCCGCATCTGGCACCGGAGGTGGCGGCGGCGG
C
GGCGGGGCGAGCGGCGGGACTAGCGGCAGCTGCAGCCCCGCGTCCTCGGAGCCGCCGGCTGCGCCCGCC
GAC
CGCCTGCGCGCCGAGAGCCCGTCGCCGCCGCGCCTGCTGGCCGCGCACTGCGCGCTGCTGCCCAAGC
CG
GGCTTCCTGGGCGCGGGCGGCGGCGGCGGCGGCACGGGCGGCGGGCACGGGGGGCCCCACCACCACGC
G
CATCCGGGCGCAGCGGCCGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGGGGGCCTGGCGCTGGGG
CTG
CACCCTGGGGGCGCGCAGGGCGGCGCGGGCCTCCCGGCGCAGGCGGCGCTCTACGGCCACCCGGTCT
AC
GGCTACTCCGCGGCGGCGGCGGCGGCTGCGCTGGCGGGCCAGCACCCGGCGCTCTCCTACTCGTACCC
G
CAGGTGCAAGGCGCGCACCCCGCGCACCCCGCCGACCCCATCAAGCTGGGCGCCGGCACCTTCCAGCTG
GAC
CAGTGGCTGCGCGCGTCCACCGCGGGCATGATCCTGCCTAAGATGCCCGACTTCAACTCCCAGGCGC
AG
TCGAACCTCCTGGGGAAGTGCCGCCGGCCGCGCACCGCCTTCACCAGCCAGCAGCTGCTGGAGCTGGA
G
CACCAGTTCAAGCTCAACAAGTACCTGTCGCGGCCCAAGCGCTTCGAGGTGGCCACCTCGCTCATGCTC
ACC
GAGACCCAGGTGAAGATTTGGTTCCAGAACCGGCGGATGAAATGGAAACGCAGCAAAAAGGCCAAAG
AG
CAGGCGGCGCAGGAAGCGGAGAAACAGAAGGGCGGCGGCGGGGGCGCGGGGAAGGGCGGCGCGGAGGA
G
CCGGGAGCCGAGGAGCTGCTGGGGCCGCCAGCGCCCGGAGACAAGGGCAGCGGACGCCGCCTGCGGGAC
TTG
AGGGACAGTGACCCCGAGGAGGACGAGGACGAGGACGACGAGGACCATTTCCCCTACAGCAACGGCG
CC
AGCGTCCACGCCGCCTCCTCCGACTGCTCCTCGGAGGACGACTCGCCGCCCCCGCGGCCCAGCCACCA
G
CCCGCGCCCCAGTAG


Translation (401 aa):
MEKSKNFRIDALLAVDPPRAASAQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSPASSEPPAAPA
D
RLRAESPSPPRLLAAHCALLPKPGFLGAGGGGGGTGGGHGGPHHHAHPGAAAAAAAAAAAAAAGGLALG
L
HPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAHPADPIKLGAGTFQL
D
QWLRASTAGMILPKMPDFN
SQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLML
T
ETQ
VKIWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGAGKGGAEEPGAEELLGPPAPGDKGSGRRLRD
L
RDSDPEEDEDEDDEDHFPYSNGASVHAASSDCSSEDDSPPPRPSHQPAPQ




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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