CCDS Report for Consensus CDS

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Report for CCDS34659.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
34659.1	Public	Homo sapiens	7	GTF2IRD2B	24	110	108

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34659.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000472837.7	ENSP00000480524.1	MANE Select	Accepted	alive
		NCBI	NM_001003795.3	NP_001003795.1	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001003795.1	949	Q6EKJ0-1	949	100%	0	0

Chromosomal Locations for CCDS 34659.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)

Genome Browser links:

Chromosome	Start	Stop
7	75108965	75109063
7	75112397	75112535
7	75120891	75121010
7	75123136	75123319
7	75123488	75123516
7	75125916	75125970
7	75126342	75126385
7	75133135	75133212
7	75135001	75135057
7	75136785	75136850
7	75138950	75139027
7	75141103	75141186
7	75142482	75142665
7	75143950	75143978
7	75147694	75149297

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2850 nt):
ATGGCCCAGGTAGCAGTGTCCACCCTGCCTGTTGAAGAAGAGTCCTCCTCAGAGACCAGGATGGTGGTGA CATTCCTCGTGTCTGCCCTCGAATCCATGTGTAAAGAACTGGCCAAGTCCAAGGCAGAAGTGGCCTGCAT CGCAGTGTACGAAACAGACGTGTTTGTCGTCGGAACCGAGAGAGGATGCGCTTTTGTTAATGCCAGGACG GATTTTCAGAAAGATTTTGCAAAATACTGCGTTGCAGAGGGACTGTGTGAGGTGAAACCTCCCTGCCCTG TGAACGGGATGCAGGTCCACTCGGGCGAAACGGAAATACTCAGGAAGGCAGTGGAGGACTATTTCTGCTT TTGTTATGGTAAAGCCTTAGGGACAACAGTGATGGTGCCTGTTCCCTATGAGAAGATGCTGCGAGACCAG TCGGCTGTGGTAGTGCAGGGGCTTCCGGAAGGCGTTGCCTTTCAACACCCTGAGAATTACGACCTTGCAA CCCTGAAATGGATTTTGGAGAACAAAGCAGGGATTTCATTCATCATAAATAGACCCTTCCTAGGACCAGA GAGTCAGCTGGGTGGCCCTGGGATGGTAACAGATGCGGAGAGATCCATAGTATCACCAAGTGAAAGCTGC GGCCCCATCAATGTGAAAACTGAACCCATGGAAGATTCTGGCATTTCACTGAAAGCAGAAGCTGTCTCAG TCAAGAAAGAATCAGAAGATCCTAATTACTATCAATATAATATGCAAGGAAGCCACCCTTCTTCCACAAG CAATGAAGTAATAGAAATGGAATTACCAATGGAAGATTCCACTCCGCTGGTCCCTTCAGAAGAACCAAAT GAGGACCCTGAAGCCGAGGTGAAAATCGAAGGAAACACAAATTCATCCAGTGTTACAAATTCTGCAGCAG GTGTTGAAGATCTTAACATCGTTCAAGTGACTGTTCCAGATAATGAGAAGGAAAGATTATCAAGCATTGA AAAGATTAAACAGCTAAGAGAACAAGTTAATGACCTCTTTAGCCGAAAATTTGGTGAAGCAATTGGCGTG GATTTCCCTGTGAAAGTTCCCTACAGGAAGATCACATTCAACCCTGGCTGTGTGGTGATTGATGGCATGC CCCCGGGGGTGGTATTCAAGGCCCCCGGCTATCTGGAAATCAGTTCCATGAGGAGGATCTTGGAGGCAGC TGAGTTTATCAAATTCACAGTCATCAGGCCGCTTCCAGGGCTTGAGCTCAGTAATGTGGGAAAACGCAAG ATAGACCAGGAGGGCCGTGTGTTTCAAGAAAAGTGGGAGAGAGCGTATTTCTTCGTGGAAGTACAGAATA TTCCAACATGTCTCATATGCAAACAAAGCATGTCTGTGTCCAAAGAATATAACCTAAGACGCCACTATCA AACCAATCACAGCAAGCATTATGACCAGTATACGGAAAGAATGCGTGACGAGAAGCTTCACGAGCTGAAA AAAGGGCTCAGGAAGTATCTCTTAGGCTCGTCAGACACCGAGTGTCCCGAGCAAAAACAAGTGTTTGCAA ACCCAAGTCCAACCCAGAAATCCCCCGTGCAGCCTGTAGAGGACCTAGCTGGGAACTTATGGGAGAAGTT ACGTGAAAAAATCAGGTCTTTTGTGGCATATTCTATCGCAATCGATGAGATCACGGATATAAATAATACC ACCCAGTTGGCCATATTCATCCGTGGTGTCGATGAGAATTTCGATGTGTCCGAAGAACTTCTGGACACGG TGCCCATGACGGGTACAAAATCTGGCAACGAGATCTTTTTGCGTGTTGAGAAGAGCCTGAAAAAGTTCTG TATCAACTGGTCGAGATTAGTAAGCGTGGCCTCCACTGGCACCCCAGCGATGGTGGATGCCAATAACGGG CTTGTCACAAAACTGAAGTCCAGGGTGGCGACGTTCTGCAAGGGTGCGGAACTGAAGTCCATCTGTTGTA TAATTCATCCGGAATCACTCTGTGCTCAGAAGTTGAAGATGGACCACGTCATGGACGTGGTAGTGAAGTC CGTGAACTGGATATGCTCCCGGGGACTGAACCACAGCGAGTTCACAACCTTGCTCTATGAGCTGGACAGC CAGTATGGTAGCCTCCTGTACTACACGGAGATTAAGTGGCTCAGTCGCGGGCTCGTGCTAAAGAGATTTT TCGAATCCTTGGAAGAAATCGACTCCTTCATGTCATCCAGAGGGAAACCCCTGCCTCAACTGAGCTCCAT AGATTGGATCCGAGACCTGGCCTTCTTGGTTGACATGACGATGCATCTGAACGCTTTGAACATCTCTCTC CAAGGACACTCCCAAATCGTCACGCAGATGTATGACCTGATCCGGGCGTTCCTAGCAAAACTGTGCCTCT GGGAGACTCATTTGACGAGGAATAATCTGGCCCACTTTCCCACCCTGAAATTGGTTTCCAGAAATGAAAG CGATGGCCTGAACTACATTCCCAAAATCGCGGAACTCAAGACCGAATTCCAGAAAAGGCTGTCTGATTTC AAACTCTACGAAAGCGAACTGACTCTGTTCAGCTCCCCGTTCTCCACGAAGATCGACAGTGTGCACGAGG AGCTCCAGATGGAGGTTATCGACCTGCAATGCAACACGGTCCTGAAGACGAAATACGACAAGGTGGGAAT ACCAGAATTCTACAAGTACCTCTGGGGTAGCTACCCGAAATACAAGCACCATTGCGCAAAGATTCTTTCC ATGTTCGGGAGCACCTACATCTGCGAACAGCTGTTCTCCATTATGAAACTGAGCAAAACAAAATACTGCT CCCAGTTAAAGGATTCCCAGTGGGATTCTGTACTCCACATCGCAACGTGA
Translation (949 aa):
MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNART DFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQ SAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESC GPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPN EDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGV DFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRK IDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELK KGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNT TQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNG LVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDS QYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISL QGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDF KLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILS MFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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