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Report for CCDS34097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34097.1 Public Homo sapiens 4 DDX60 24 110 108 CCDS HistoryNCBI Gene:55601Re-query CCDS DB by CCDS ID:34097.1Re-query CCDS DB by GeneID:55601See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34097.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393743.8 ENSP00000377344.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393743.8Link to Ensembl Protein Viewer:ENSP00000377344.3Re-query CCDS DB by Nucleotide ID:ENST00000393743Re-query CCDS DB by Protein ID:ENSP00000377344
Original member Current member NCBI NM_017631.6 NP_060101.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017631.6Link to Protein Sequence:NP_060101.3Re-query CCDS DB by Nucleotide ID:NM_017631Re-query CCDS DB by Protein ID:NP_060101Link to BLAST:NP_060101.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060101.3 1712 Q8IY21 1712 100% 0 0

Chromosomal Locations for CCDS 34097.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 168216933 168217032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168220655 168220717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168221730 168221881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168224243 168224385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168225529 168225676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168236252 168236373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168237286 168237427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168237691 168237795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168246418 168246618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168248188 168248292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168250954 168251106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168252509 168252656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168255711 168255869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168260865 168260989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168262000 168262128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168262683 168262787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168267582 168267691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168267841 168267983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168268854 168268969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168272043 168272138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168273279 168273398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168273934 168274083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168275345 168275503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168276015 168276181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168280335 168280590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168283446 168283606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168284820 168284935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168285393 168285498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168287048 168287203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168288174 168288315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168291748 168291906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168293787 168293945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168302300 168302416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168306379 168306720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168308006 168308195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168310998 168311067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 168311256 168311259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5139 nt):
ATGGAAAGAAATGTTCTTACAACATTTTCACAGGAAATGTCCCAGTTAATTTTGAATGAAATGCCAAAAG
CTGAATATTCCAGTTTATTCAATGATTTTGTTGAATCTGAATTTTTTTTGATTGATGGGGATTCATTACT
TATCACATGTATCTGTGAGATATCATTTAAGCCTGGGCAGAACCTCCATTTCTTCTATCTGGTTGAACGC
TATCTTGTGGATCTTATTAGCAAAGGAGGACAATTCACCATAGTTTTCTTCAAGGATGCCGAGTATGCGT
ATTTCAACTTCCCTGAACTTCTTTCTTTGAGAACTGCTTTAATTCTTCATCTTCAGAAGAATACCACCAT
TGATGTTCGAACAACATTTTCGAGATGCTTATCAAAAGAGTGGGGAAGTTTCTTGGAAGAGAGTTACCCA
TATTTCCTGATAGTTGCAGACGAAGGCCTGAACGATCTACAAACACAGCTTTTCAACTTTTTAATCATTC
ATTCTTGGGCAAGGAAGGTCAACGTTGTACTTTCCTCAGGGCAAGAATCTGATGTTCTTTGCCTTTATGC
ATACCTTCTTCCAAGCATGTACAGACACCAGATTTTTTCCTGGAAGAATAAGCAGAACATTAAAGATGCT
TATACAACCCTGCTTAACCAGTTGGAAAGATTTAAGCTTTCAGCATTAGCACCTCTTTTTGGAAGTTTAA
AATGGAATAATATTACGGAAGAGGCACACAAGACTGTATCTCTGCTTACACAAGTCTGGCCAGAAGGATC
TGACATTCGGCGTGTCTTTTGTGTTACTTCATGCTCATTATCTTTGAGAATGTACCATCGCTTTTTAGGA
AACAGAGAGCCCTCCTCTGGTCAGGAAACTGAGATCCAACAGGTGAACAGTAATTGCTTAACCCTGCAGG
AGATGGAAGATTTGTGTAAACTGCATTGTCTCACTGTGGTTTTTCTACTCCATCTGCCTCTTTCTCAAAG
AGCTTGTGCTAGAGTCATCACTTCCCATTGGGCTGAGGACATGAAGCCTTTATTACAAATGAAAAAGTGG
TGTGAATATTTCATCTTAAGAAATATACATACTTTTGAATTTTGGAATCTGAATTTAATTCACCTTTCTG
ACTTAAATGATGAGCTTTTGTTGAAGAATATTGCTTTTTACTATGAAAATGAAAATGTAAAAGGCCTACA
TTTGAATTTGGGAGATACCATTATGAAAGATTATGAATATCTCTGGAATACCGTATCAAAGTTGGTCAGA
GACTTTGAGGTTGGACAGCCATTTCCTCTGAGAACAACAAAAGTTTGTTTTCTTGAAAAGAAACCATCAC
CAATCAAAGACAGCTCCAATGAAATGGTGCCCAATTTGGGTTTTATTCCAACGTCATCTTTTGTGGTTGA
TAAATTTGCTGGAGATATTTTGAAAGATTTGCCTTTTCTAAAGAGTGATGATCCTATTGTTACTTCACTG
GTTAAACAAAAGGAATTTGATGAACTTGTGCACTGGCATTCTCATAAACCCCTGAGTGATGATTATGACA
GGTCCAGGTGTCAGTTTGATGAAAAATCTAGAGACCCTCGTGTTCTTAGATCTGTGCAAAAGTATCATGT
TTTCCAACGGTTTTATGGGAATTCATTAGAAACAGTCTCTTCGAAAATCATCGTGACTCAAACTATTAAG
TCAAAGAAGGATTTTAGTGGGCCCAAGAGCAAAAAGGCACACGAGACCAAGGCTGAAATAATTGCTAGAG
AGAATAAGAAAAGGTTATTTGCCAGGGAAGAACAAAAGGAAGAGCAAAAGTGGAATGCTTTGTCATTTTC
TATTGAAGAGCAATTGAAAGAAAATTTACACTCTGGAATAAAGAGCCTGGAAGATTTTTTGAAATCCTGT
AAAAGTAGCTGTGTGAAACTTCAGGTTGAAATGGTGGGGTTAACTGCTTGCTTGAAAGCCTGGAAAGAAC
ATTGCCGAAGTGAAGAAGGTAAAACCACGAAAGATTTAAGTATAGCTGTTCAGGTGATGAAAAGGATCCA
CTCCTTGATGGAAAAATACTCAGAACTTTTACAAGAAGATGATCGGCAACTCATAGCCAGATGCCTTAAG
TATTTAGGATTTGATGAGTTGGCAAGTTCTTTACATCCAGCCCAGGATGCAGAAAATGATGTAAAAGTGA
AGAAAAGGAATAAATATTCAGTTGGCATTGGGCCAGCTCGGTTCCAACTGCAATACATGGGCCATTATTT
GATACGAGATGAGAGAAAAGACCCAGATCCCAGGGTCCAGGATTTTATTCCCGACACATGGCAGCGAGAG
CTCCTTGATGTTGTGGATAAGAATGAGTCAGCAGTGATTGTTGCCCCAACGTCCTCAGGCAAAACCTATG
CCTCCTACTACTGTATGGAGAAAGTGCTGAAGGAGAGCGACGACGGGGTGGTCGTGTACGTTGCACCCAC
AAAGGCCCTTGTTAATCAAGTGGCAGCAACTGTTCAGAATCGTTTTACGAAAAATCTGCCAAGTGGTGAA
GTTCTCTGTGGTGTTTTCACCAGGGAGTATCGTCATGATGCCTTAAACTGTCAGGTACTTATTACAGTGC
CTGCCTGCTTTGAAATTCTGCTGCTTGCTCCTCATCGCCAAAACTGGGTGAAAAAGATCAGATATGTTAT
ATTTGATGAGGTTCATTGTCTTGGTGGAGAAATTGGAGCAGAAATCTGGGAACATCTCCTTGTCATGATC
CGATGTCCCTTTTTGGCTCTTTCAGCTACCATAAGTAATCCTGAACATCTCACCGAGTGGCTACAATCGG
TAAAATGGTACTGGAAACAAGAAGACAAAATAATTGAAAATAATACCGCTTCTAAAAGACATGTGGGTCG
TCAGGCCGGCTTTCCCAAAGACTACTTGCAAGTAAAACAATCGTATAAAGTTAGACTTGTGCTCTATGGA
GAGAGGTATAATGATCTAGAGAAGCATGTATGTTCAATAAAACATGGTGACATTCATTTTGATCATTTTC
ACCCATGTGCTGCACTAACAACAGATCATATTGAAAGGTATGGATTCCCTCCTGATCTTACCCTTTCACC
TCGAGAAAGCATCCAGCTGTATGATGCCATGTTTCAAATTTGGAAAAGTTGGCCTCGGGCCCAGGAACTG
TGCCCAGAAAACTTCATTCATTTTAACAATAAATTAGTCATTAAAAAGATGGATGCTAGGAAATATGAAG
AGAGTCTAAAGGCAGAATTAACAAGTTGGATTAAAAATGGCAACGTAGAGCAGGCCAGAATGGTACTTCA
GAATCTTAGTCCTGAAGCAGATTTGAGTCCAGAAAACATGATCACCATGTTTCCACTTCTAGTTGAAAAA
CTAAGGAAAATGGAGAAGTTACCTGCACTATTTTTTTTATTCAAGTTAGGAGCTGTAGAAAACGCAGCTG
AAAGTGTGAGCACTTTCCTAAAGAAAAAGCAGGAGACAAAAAGGCCTCCCAAAGCTGATAAAGAAGCCCA
TGTCATGGCTAACAAACTTCGAAAAGTTAAAAAATCCATAGAGAAACAAAAGATCATAGATGAAAAGAGC
CAGAAAAAAACCAGAAATGTGGATCAAAGCCTAATACATGAAGCTGAACATGATAATCTAGTGAAGTGTC
TAGAGAAGAACCTGGAAATCCCACAGGACTGCACATATGCTGATCAAAAAGCAGTGGACACTGAGACTTT
GCAGAAGGTATTTGGTCGAGTAAAATTTGAAAGAAAAGGTGAAGAATTGAAAGCCTTGGCAGAAAGGGGT
ATTGGATATCATCACAGTGCTATGAGTTTCAAAGAAAAACAATTAGTTGAAATCCTCTTTAGAAAAGGAT
ATCTTAGGGTGGTGACAGCTACTGGAACACTTGCTTTAGGTGTCAACATGCCTTGTAAATCTGTGGTTTT
TGCTCAAAACTCAGTCTATCTGGATGCGTTGAATTATAGACAGATGTCTGGCCGTGCTGGAAGAAGAGGT
CAAGACCTGATGGGAGATGTATATTTCTTTGATATTCCATTCCCCAAAATAGGAAAACTCATAAAATCCA
ATGTTCCTGAGCTGAGAGGACACTTCCCTCTCAGCATAACCCTGGTCCTGCGACTCATGCTGCTGGCTTC
CAAGGGAGATGACCCAGAGGATGCCAAGGCAAAGGTGCTATCAGTGCTAAAGCATTCATTGCTGTCCTTC
AAGCAACCCAGAGTCATGGACATGTTAAAACTTTACTTCCTGTTTTCTTTGCAGTTCCTGGTGAAAGAGG
GCTATTTAGATCAAGAAGGTAATCCTATGGGGTTTGCTGGACTTGTATCACATTTGCATTATCATGAACC
TTCTAATCTTGTTTTTGTCAGTTTTCTTGTAAATGGACTCTTCCATGATCTCTGTCAGCCAACCAGGAAA
GGCTCAAAACATTTTTCTCAAGACGTTATGGAAAAGCTAGTATTAGTATTGGCACATCTCTTTGGAAGAA
GATATTTTCCACCAAAGTTCCAAGATGCACACTTCGAGTTTTATCAATCAAAGGTGTTCCTTGATGATCT
CCCTGAGGATTTTAGTGATGCTTTAGATGAATATAACATGAAAATTATGGAGGACTTTACCACTTTCCTA
CGAATTGTTTCCAAACTGGCTGATATGAATCAGGAATATCAACTCCCATTGTCAAAAATCAAATTCACAG
GTAAAGAATGTGAAGACTCTCAACTCGTATCTCATTTGATGAGCTGCAAGGAAGGAAGAGTAGCAATTTC
ACCATTTGTTTGTCTGTCTGGGAACTTTGATGATGATTTGCTTCGACTAGAAACTCCAAACCATGTTACT
CTAGGCACAATCGGTGTCAATCGCTCTCAGGCTCCAGTGCTGTTGTCACAGAAATTTGATAACCGAGGAA
GGAAAATGTCGCTTAATGCCTATGCACTGGATTTCTACAAACATGGTTCCTTGATAGGATTAGTCCAGGA
TAACAGGATGAATGAAGGAGATGCTTATTATTTGTTGAAGGATTTTGCACTCACCATTAAATCTATCAGT
GTTTCCTTGCGTGAGCTATGTGAAAATGAAGACGACAACGTTGTCTTAGCCTTTGAACAACTGAGTACAA
CTTTTTGGGAAAAGTTAAACAAAGTCTAA

Translation (1712 aa):
MERNVLTTFSQEMSQLILNEMPKAEYSSLFNDFVESEFFLIDGDSLLITCICEISFKPGQNLHFFYLVER
YLVDLISKGGQFTIVFFKDAEYAYFNFPELLSLRTALILHLQKNTTIDVRTTFSRCLSKEWGSFLEESYP
YFLIVADEGLNDLQTQLFNFLIIHSWARKVNVVLSSGQESDVLCLYAYLLPSMYRHQIFSWKNKQNIKDA
YTTLLNQLERFKLSALAPLFGSLKWNNITEEAHKTVSLLTQVWPEGSDIRRVFCVTSCSLSLRMYHRFLG
NREPSSGQETEIQQVNSNCLTLQEMEDLCKLHCLTVVFLLHLPLSQRACARVITSHWAEDMKPLLQMKKW
CEYFILRNIHTFEFWNLNLIHLSDLNDELLLKNIAFYYENENVKGLHLNLGDTIMKDYEYLWNTVSKLVR
DFEVGQPFPLRTTKVCFLEKKPSPIKDSSNEMVPNLGFIPTSSFVVDKFAGDILKDLPFLKSDDPIVTSL
VKQKEFDELVHWHSHKPLSDDYDRSRCQFDEKSRDPRVLRSVQKYHVFQRFYGNSLETVSSKIIVTQTIK
SKKDFSGPKSKKAHETKAEIIARENKKRLFAREEQKEEQKWNALSFSIEEQLKENLHSGIKSLEDFLKSC
KSSCVKLQVEMVGLTACLKAWKEHCRSEEGKTTKDLSIAVQVMKRIHSLMEKYSELLQEDDRQLIARCLK
YLGFDELASSLHPAQDAENDVKVKKRNKYSVGIGPARFQLQYMGHYLIRDERKDPDPRVQDFIPDTWQRE
LLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLKESDDGVVVYVAPTKALVNQVAATVQNRFTKNLPSGE
VLCGVFTREYRHDALNCQVLITVPACFEILLLAPHRQNWVKKIRYVIFDEVHCLGGEIGAEIWEHLLVMI
RCPFLALSATISNPEHLTEWLQSVKWYWKQEDKIIENNTASKRHVGRQAGFPKDYLQVKQSYKVRLVLYG
ERYNDLEKHVCSIKHGDIHFDHFHPCAALTTDHIERYGFPPDLTLSPRESIQLYDAMFQIWKSWPRAQEL
CPENFIHFNNKLVIKKMDARKYEESLKAELTSWIKNGNVEQARMVLQNLSPEADLSPENMITMFPLLVEK
LRKMEKLPALFFLFKLGAVENAAESVSTFLKKKQETKRPPKADKEAHVMANKLRKVKKSIEKQKIIDEKS
QKKTRNVDQSLIHEAEHDNLVKCLEKNLEIPQDCTYADQKAVDTETLQKVFGRVKFERKGEELKALAERG
IGYHHSAMSFKEKQLVEILFRKGYLRVVTATGTLALGVNMPCKSVVFAQNSVYLDALNYRQMSGRAGRRG
QDLMGDVYFFDIPFPKIGKLIKSNVPELRGHFPLSITLVLRLMLLASKGDDPEDAKAKVLSVLKHSLLSF
KQPRVMDMLKLYFLFSLQFLVKEGYLDQEGNPMGFAGLVSHLHYHEPSNLVFVSFLVNGLFHDLCQPTRK
GSKHFSQDVMEKLVLVLAHLFGRRYFPPKFQDAHFEFYQSKVFLDDLPEDFSDALDEYNMKIMEDFTTFL
RIVSKLADMNQEYQLPLSKIKFTGKECEDSQLVSHLMSCKEGRVAISPFVCLSGNFDDDLLRLETPNHVT
LGTIGVNRSQAPVLLSQKFDNRGRKMSLNAYALDFYKHGSLIGLVQDNRMNEGDAYYLLKDFALTIKSIS
VSLRELCENEDDNVVLAFEQLSTTFWEKLNKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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