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Report for CCDS33936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33936.1 Public Homo sapiens 4 MAEA 24 110 108 CCDS HistoryNCBI Gene:10296Re-query CCDS DB by CCDS ID:33936.1Re-query CCDS DB by GeneID:10296See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33936.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303400.9 ENSP00000302830.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303400.9Link to Ensembl Protein Viewer:ENSP00000302830.4Re-query CCDS DB by Nucleotide ID:ENST00000303400Re-query CCDS DB by Protein ID:ENSP00000302830
Original member Current member NCBI NM_001017405.3 NP_001017405.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001017405.3Link to Protein Sequence:NP_001017405.1Re-query CCDS DB by Nucleotide ID:NM_001017405Re-query CCDS DB by Protein ID:NP_001017405Link to BLAST:NP_001017405.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017405.1 396 Q7L5Y9-1 396 100% 0 0

Chromosomal Locations for CCDS 33936.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 1289914 1289982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1311979 1312161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1315397 1315600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1322381 1322503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1327627 1327703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1332757 1332865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1336861 1336994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1338422 1338617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1339074 1339169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGCGGTGCAGGAGTCGGCGGCTCAGTTGTCCATGACCCTGAAGGTCCAGGAGTACCCGACCCTCAAGG
TGCCCTACGAGACGCTGAACAAACGCTTTCGCGCCGCTCAGAAGAACATTGACCGGGAGACCAGCCACGT
CACCATGGTGGTGGCCGAGCTGGAGAAGACGTTGAGCGGCTGCCCCGCCGTGGACTCCGTGGTCAGCCTG
CTGGACGGCGTGGTGGAGAAGCTCAGCGTCCTCAAGAGGAAGGCGGTGGAATCCATCCAGGCCGAGGACG
AGAGCGCCAAGCTGTGCAAGCGCCGGATCGAGCACCTCAAAGAGCATAGCAGCGACCAGCCCGCGGCGGC
CAGCGTGTGGAAGAGGAAGCGCATGGATCGCATGATGGTGGAGCACCTGCTGCGTTGCGGCTACTACAAC
ACGGCTGTCAAGCTGGCGCGCCAGAGCGGCATCGAGGACCTAGTGAATATTGAGATGTTCCTGACGGCCA
AAGAGGTGGAGGAGTCCCTGGAGAGGCGTGAGACGGCCACCTGCCTGGCCTGGTGCCATGACAACAAGTC
CCGGCTCCGGAAGATGAAGAGCTGCCTGGAGTTCAGCCTCAGAATCCAGGAGTTCATTGAACTCATCCGG
CAGAATAAGAGACTGGACGCTGTGAGACATGCAAGAAAGCACTTCAGCCAAGCAGAAGGGAGCCAGCTGG
ACGAGGTGCGCCAGGCCATGGGCATGCTGGCCTTCCCGCCCGACACGCACATCTCCCCGTACAAGGACCT
TCTGGACCCTGCACGGTGGCGGATGCTGATCCAGCAGTTCCGGTACGACAACTACCGACTACACCAGCTG
GGAAACAATTCTGTGTTCACCCTCACCCTGCAGGCTGGCCTCTCAGCCATCAAGACACCACAGTGCTACA
AGGAGGACGGCAGCTCCAAGAGCCCTGACTGCCCTGTGTGCAGCCGCTCCCTGAACAAGCTGGCGCAGCC
CCTGCCCATGGCCCACTGTGCCAACTCCCGCCTGGTCTGCAAGATTTCTGGCGACGTGATGAACGAGAAC
AATCCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAATTCTCTGCTTTCTATCCGTCAAGATG
ATAAAGTCGTGTGCCCGAGAACCAAAGAAGTCTTCCACTTCTCACAAGCCGAGAAGGTGTACATCATGTA
G

Translation (396 aa):
MAVQESAAQLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSGCPAVDSVVSL
LDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMDRMMVEHLLRCGYYN
TAVKLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLAWCHDNKSRLRKMKSCLEFSLRIQEFIELIR
QNKRLDAVRHARKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQL
GNNSVFTLTLQAGLSAIKTPQCYKEDGSSKSPDCPVCSRSLNKLAQPLPMAHCANSRLVCKISGDVMNEN
NPPMMLPNGYVYGYNSLLSIRQDDKVVCPRTKEVFHFSQAEKVYIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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