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Report for CCDS33375.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33375.1 Public Homo sapiens 2 PECR 24 110 108 CCDS HistoryNCBI Gene:55825Re-query CCDS DB by CCDS ID:33375.1Re-query CCDS DB by GeneID:55825See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 33375.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265322.8 ENSP00000265322.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265322.8Link to Ensembl Protein Viewer:ENSP00000265322.7Re-query CCDS DB by Nucleotide ID:ENST00000265322Re-query CCDS DB by Protein ID:ENSP00000265322
Original member Current member NCBI NM_018441.6 NP_060911.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018441.6Link to Protein Sequence:NP_060911.2Re-query CCDS DB by Nucleotide ID:NM_018441Re-query CCDS DB by Protein ID:NP_060911Link to BLAST:NP_060911.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060911.2 303 Q9BY49-1 303 100% 0 0

Chromosomal Locations for CCDS 33375.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 216039275 216039360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 216043904 216044015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 216049263 216049373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 216051449 216051545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 216058895 216058976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 216065312 216065477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 216066385 216066518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 216081618 216081741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGCCTCCTGGGCTAAGGGCAGGAGCTACCTGGCGCCTGGTTTGCTGCAGGGCCAAGTGGCCATCGTCA
CCGGCGGGGCCACGGGCATCGGAAAAGCCATCGTGAAGGAGCTCCTGGAGCTGGGGAGTAATGTGGTCAT
TGCATCCCGTAAGTTGGAGAGATTGAAGTCTGCGGCAGATGAACTGCAGGCCAACCTACCTCCCACAAAG
CAGGCACGAGTCATTCCCATACAATGCAACATCCGGAATGAGGAGGAGGTGAATAATTTGGTCAAATCTA
CCTTAGATACTTTTGGTAAGATCAATTTCTTGGTGAACAATGGAGGAGGCCAGTTTCTTTCCCCTGCTGA
ACACATCAGTTCTAAGGGATGGCACGCTGTGCTTGAGACCAACCTGACGGGTACCTTCTACATGTGCAAA
GCAGTTTACAGCTCCTGGATGAAAGAGCATGGAGGATCTATCGTCAATATCATTGTCCCTACTAAAGCTG
GATTTCCATTAGCTGTGCATTCTGGAGCTGCAAGAGCAGGTGTTTACAACCTCACCAAATCTTTAGCTTT
GGAATGGGCCTGCAGTGGAATACGGATCAATTGTGTTGCCCCTGGAGTTATTTATTCCCAGACTGCTGTG
GAGAACTATGGTTCCTGGGGACAAAGCTTCTTTGAAGGGTCTTTTCAGAAAATCCCCGCTAAACGAATTG
GTGTTCCTGAGGAGGTCTCCTCTGTGGTCTGCTTCCTACTGTCTCCTGCAGCTTCCTTCATCACTGGACA
GTCGGTGGATGTGGATGGGGGCCGGAGTCTCTATACTCACTCGTATGAGGTACCAGATCATGACAACTGG
CCCAAGGGAGCAGGGGACCTTTCTGTTGTCAAAAAGATGAAGGAGACCTTTAAGGAGAAAGCTAAGCTCT
GA

Translation (303 aa):
MASWAKGRSYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTK
QARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCK
AVYSSWMKEHGGSIVNIIVPTKAGFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAV
ENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSLYTHSYEVPDHDNW
PKGAGDLSVVKKMKETFKEKAKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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