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Report for CCDS33030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33030.1 Public Homo sapiens 19 RAB4B 24 110 108 CCDS HistoryNCBI Gene:53916Re-query CCDS DB by CCDS ID:33030.1Re-query CCDS DB by GeneID:53916See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33030.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357052.8 ENSP00000349560.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357052.8Link to Ensembl Protein Viewer:ENSP00000349560.2Re-query CCDS DB by Nucleotide ID:ENST00000357052Re-query CCDS DB by Protein ID:ENSP00000349560
Original member Current member EBI ENST00000594136.2 ENSP00000469872.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000594136.2Link to Ensembl Protein Viewer:ENSP00000469872.1Re-query CCDS DB by Nucleotide ID:ENST00000594136Re-query CCDS DB by Protein ID:ENSP00000469872
Original member Current member EBI ENST00000594800.5 ENSP00000470246.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000594800.5Link to Ensembl Protein Viewer:ENSP00000470246.1Re-query CCDS DB by Nucleotide ID:ENST00000594800Re-query CCDS DB by Protein ID:ENSP00000470246
Original member Current member NCBI NM_016154.5 NP_057238.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016154.5Link to Protein Sequence:NP_057238.3Re-query CCDS DB by Nucleotide ID:NM_016154Re-query CCDS DB by Protein ID:NP_057238Link to BLAST:NP_057238.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057238.3 213 P61018-1 213 100% 0 0

Chromosomal Locations for CCDS 33030.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40778376 40778391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40780019 40780099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40780385 40780499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40783778 40783840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40783921 40784075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40786665 40786760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40786848 40786963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGCTGAGACCTACGACTTCCTCTTCAAATTCCTGGTGATTGGCAGTGCAGGAACTGGCAAATCATGTC
TCCTTCATCAGTTCATTGAGAATAAGTTCAAACAGGACTCCAACCACACAATCGGCGTGGAGTTTGGATC
CCGGGTGGTCAACGTGGGTGGGAAGACTGTGAAGCTACAGATTTGGGACACGGCTGGCCAGGAGCGGTTT
CGGTCAGTGACGCGGAGTTATTACCGAGGGGCGGCTGGAGCCCTGCTGGTGTACGACATCACCAGCCGGG
AGACATACAACTCACTGGCTGCCTGGCTGACGGATGCCCGCACCCTGGCCAGCCCCAACATCGTGGTCAT
CCTCTGTGGCAACAAGAAGGACCTGGACCCTGAGCGGGAGGTCACTTTCCTGGAGGCCTCCCGCTTTGCC
CAGGAGAATGAGCTGATGTTCCTGGAGACCAGCGCTCTCACAGGCGAGAACGTGGAGGAGGCGTTCCTCA
AGTGTGCCCGCACTATCCTCAACAAGATTGACTCAGGCGAGCTAGACCCGGAGAGGATGGGCTCTGGCAT
TCAGTACGGGGATGCGTCCCTCCGCCAGCTTCGGCAGCCTCGGAGTGCCCAGGCCGTGGCCCCTCAGCCG
TGTGGCTGCTGA

Translation (213 aa):
MAETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERF
RSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFA
QENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPERMGSGIQYGDASLRQLRQPRSAQAVAPQP
CGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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