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Report for CCDS32627.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32627.2 Public Homo sapiens 17 CCL4L2 24 110 108 CCDS HistoryNCBI Gene:9560Re-query CCDS DB by CCDS ID:32627.2Re-query CCDS DB by GeneID:9560See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 32627.1
The coding region has been updated to represent an alternative splicing pattern that can be produced by the allele represented by primary chromosome 17 of the GRCh38 reference genome assembly.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 32627.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000620576.4 ENSP00000479354.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620576.4Link to Ensembl Protein Viewer:ENSP00000479354.1Re-query CCDS DB by Nucleotide ID:ENST00000620576Re-query CCDS DB by Protein ID:ENSP00000479354
Original member Current member NCBI NM_001291468.2 NP_001278397.1 Accepted alive Link to Nucleotide Sequence:NM_001291468.2Link to Protein Sequence:NP_001278397.1Re-query CCDS DB by Nucleotide ID:NM_001291468Re-query CCDS DB by Protein ID:NP_001278397Link to BLAST:NP_001278397.1

Chromosomal Locations for CCDS 32627.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36211142 36211217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36211776 36211890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36212497 36212569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (264 nt):
ATGAAGCTCTGCGTGACTGTCCTGTCTCTCCTCGTGCTAGTAGCTGCCTTCTGCTCTCTAGCACTCTCAG
CACCAATGGGCTCAGACCCTCCCACCGCCTGCTGCTTTTCTTACACCGCGAGGAAGCTTCCTCGCAACTT
TGTGGTAGATTACTATGAGACCAGCAGCCTCTGCTCCCAGCCAGCTGTGGTAGGCAAGCAAGTCTGCGCT
GACCCCAGTGAGTCCTGGGTCCAGGAGTACGTGTATGACCTGGAACTGAACTGA

Translation (87 aa):
MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQPAVVGKQVCA
DPSESWVQEYVYDLELN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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