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Report for CCDS32581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32581.1 Public Homo sapiens 17 NT5M 24 110 108 CCDS HistoryNCBI Gene:56953Re-query CCDS DB by CCDS ID:32581.1Re-query CCDS DB by GeneID:56953See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32581.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389022.9 ENSP00000373674.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389022.9Link to Ensembl Protein Viewer:ENSP00000373674.4Re-query CCDS DB by Nucleotide ID:ENST00000389022Re-query CCDS DB by Protein ID:ENSP00000373674
Original member Current member NCBI NM_020201.4 NP_064586.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020201.4Link to Protein Sequence:NP_064586.1Re-query CCDS DB by Nucleotide ID:NM_020201Re-query CCDS DB by Protein ID:NP_064586Link to BLAST:NP_064586.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064586.1 228 Q9NPB1 228 100% 0 0

Chromosomal Locations for CCDS 32581.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 17303551 17303817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17306543 17306643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17323185 17323245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17344794 17344908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17346805 17346947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGATCCGGCTGGGCGGCTGGTGTGCGCGGCGGCTCTGCAGCGCGGCGGTTCCCGCGGGGCGGCGCGGGG
CGGCGGGCGGGCTGGGCCTGGCGGGAGGCCGCGCCCTACGGGTGCTGGTGGACATGGACGGCGTGCTGGC
TGACTTCGAGGGCGGATTCCTCAGGAAGTTCCGCGCGCGCTTTCCCGACCAGCCCTTCATCGCGCTGGAG
GACCGGCGCGGCTTCTGGGTGTCGGAGCAGTACGGCCGCCTGCGGCCAGGGCTGAGCGAGAAGGCCATCA
GCATTTGGGAGTCAAAGAATTTCTTTTTTGAACTTGAGCCTCTGCCAGGGGCCGTGGAAGCTGTCAAGGA
GATGGCCAGCCTACAAAACACTGACGTCTTCATCTGCACAAGCCCCATCAAGATGTTCAAGTACTGTCCC
TATGAGAAGTATGCCTGGGTGGAGAAGTACTTTGGCCCTGACTTTCTGGAGCAGATTGTGCTGACCAGAG
ACAAGACCGTGGTCTCTGCTGACCTTCTCATAGACGACCGGCCGGACATCACAGGGGCCGAGCCAACCCC
CAGCTGGGAGCATGTCCTCTTCACCGCCTGCCACAACCAGCACCTGCAGCTGCAGCCCCCCCGCCGCAGG
CTGCACTCGTGGGCGGACGACTGGAAGGCCATTCTGGACAGCAAGCGGCCCTGCTGA

Translation (228 aa):
MIRLGGWCARRLCSAAVPAGRRGAAGGLGLAGGRALRVLVDMDGVLADFEGGFLRKFRARFPDQPFIALE
DRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCP
YEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPSWEHVLFTACHNQHLQLQPPRRR
LHSWADDWKAILDSKRPC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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