NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3173.1 Public Homo sapiens 3 SLC33A1 24 110 108 CCDS HistoryNCBI Gene:9197Re-query CCDS DB by CCDS ID:3173.1Re-query CCDS DB by GeneID:9197See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3173.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359479.7 ENSP00000352456.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359479.7Link to Ensembl Protein Viewer:ENSP00000352456.3Re-query CCDS DB by Nucleotide ID:ENST00000359479Re-query CCDS DB by Protein ID:ENSP00000352456
Original member Current member EBI ENST00000643144.2 ENSP00000496241.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000643144.2Link to Ensembl Protein Viewer:ENSP00000496241.1Re-query CCDS DB by Nucleotide ID:ENST00000643144Re-query CCDS DB by Protein ID:ENSP00000496241
Original member Current member NCBI NM_001190992.2 NP_001177921.1 Accepted alive Link to Nucleotide Sequence:NM_001190992.2Link to Protein Sequence:NP_001177921.1Re-query CCDS DB by Nucleotide ID:NM_001190992Re-query CCDS DB by Protein ID:NP_001177921Link to BLAST:NP_001177921.1
Original member Current member NCBI NM_004733.4 NP_004724.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004733.4Link to Protein Sequence:NP_004724.1Re-query CCDS DB by Nucleotide ID:NM_004733Re-query CCDS DB by Protein ID:NP_004724Link to BLAST:NP_004724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177921.1 549 O00400 549 100% 0 0
NP_004724.1 549 O00400 549 100% 0 0

Chromosomal Locations for CCDS 3173.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 155828210 155828377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155829688 155829903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155833468 155833585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155833857 155834041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155842432 155842619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155853223 155853997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGTCACCCACCATCTCCCACAAGGACAGCAGCCGGCAACGGCGGCCAGGGAATTTCAGTCACTCTCTGG
ATATGAAGAGCGGTCCCCTGCCGCCAGGCGGTTGGGATGACAGTCATTTGGACTCAGCGGGCCGGGAAGG
GGACAGAGAAGCTCTTCTGGGGGATACCGGCACTGGCGACTTCTTAAAAGCCCCACAGAGCTTCCGGGCC
GAACTAAGCAGCATTTTGCTACTACTCTTTCTTTACGTGCTTCAGGGTATTCCCCTGGGCTTGGCGGGAA
GCATCCCACTCATTTTGCAAAGCAAAAATGTTAGCTATACAGACCAAGCTTTCTTCAGTTTTGTCTTTTG
GCCCTTCAGTCTCAAATTACTCTGGGCCCCGTTGGTTGATGCGGTCTACGTTAAGAACTTCGGTCGTCGC
AAATCTTGGCTTGTCCCGACACAGTATATACTAGGACTCTTCATGATCTATTTATCCACTCAGGTGGACC
GTTTGCTTGGGAATACCGATGACAGAACACCCGACGTGATTGCTCTCACTGTGGCGTTCTTTTTGTTTGA
ATTCTTGGCCGCCACTCAGGACATTGCCGTCGATGGTTGGGCGTTAACTATGTTATCCAGGGAAAATGTG
GGTTATGCTTCTACTTGCAATTCGGTGGGCCAAACAGCGGGTTACTTTTTGGGCAATGTTTTGTTTTTGG
CCCTTGAATCTGCCGACTTTTGTAACAAATATTTGCGGTTTCAGCCTCAACCCAGAGGAATCGTTACTCT
TTCAGATTTCCTTTTTTTCTGGGGAACTGTATTTTTAATAACAACAACATTGGTTGCCCTTCTGAAAAAA
GAAAACGAAGTATCAGTAGTAAAAGAAGAAACACAAGGGATCACAGATACTTACAAGCTGCTTTTTGCAA
TTATAAAAATGCCAGCAGTTCTGACATTTTGCCTTCTGATTCTAACTGCAAAGATTGGTTTTTCAGCAGC
AGATGCTGTAACAGGACTGAAATTGGTAGAAGAGGGAGTACCCAAAGAACATTTAGCCTTATTGGCAGTT
CCAATGGTTCCTTTGCAGATAATACTGCCTCTGATTATCAGCAAATACACTGCAGGTCCCCAGCCATTAA
ACACATTTTACAAAGCCATGCCCTACAGATTATTGCTTGGGTTAGAATATGCCCTACTGGTTTGGTGGAC
TCCTAAAGTAGAACATCAAGGGGGATTCCCTATATATTACTATATCGTAGTCCTGCTGAGTTATGCTTTA
CATCAGGTTACAGTGTACAGCATGTATGTTTCTATAATGGCTTTCAATGCAAAGGTTAGTGATCCACTTA
TTGGAGGAACATACATGACCCTTTTAAATACCGTGTCCAATCTGGGAGGAAACTGGCCTTCTACAGTAGC
TCTTTGGCTTGTAGATCCCCTCACAGTAAAAGAGTGTGTAGGAGCATCAAACCAGAATTGTCGAACACCT
GATGCTGTTGAGCTTTGCAAAAAACTGGGTGGCTCATGTGTTACAGCCCTGGATGGTTATTATGTGGAGT
CCATTATTTGTGTTTTCATTGGATTTGGTTGGTGGTTCTTTCTTGGTCCAAAATTTAAAAAGTTACAGGA
TGAAGGATCATCTTCGTGGAAATGCAAAAGGAACAATTAA

Translation (549 aa):
MSPTISHKDSSRQRRPGNFSHSLDMKSGPLPPGGWDDSHLDSAGREGDREALLGDTGTGDFLKAPQSFRA
ELSSILLLLFLYVLQGIPLGLAGSIPLILQSKNVSYTDQAFFSFVFWPFSLKLLWAPLVDAVYVKNFGRR
KSWLVPTQYILGLFMIYLSTQVDRLLGNTDDRTPDVIALTVAFFLFEFLAATQDIAVDGWALTMLSRENV
GYASTCNSVGQTAGYFLGNVLFLALESADFCNKYLRFQPQPRGIVTLSDFLFFWGTVFLITTTLVALLKK
ENEVSVVKEETQGITDTYKLLFAIIKMPAVLTFCLLILTAKIGFSAADAVTGLKLVEEGVPKEHLALLAV
PMVPLQIILPLIISKYTAGPQPLNTFYKAMPYRLLLGLEYALLVWWTPKVEHQGGFPIYYYIVVLLSYAL
HQVTVYSMYVSIMAFNAKVSDPLIGGTYMTLLNTVSNLGGNWPSTVALWLVDPLTVKECVGASNQNCRTP
DAVELCKKLGGSCVTALDGYYVESIICVFIGFGWWFFLGPKFKKLQDEGSSSWKCKRNN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH