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Report for CCDS30690.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30690.1 Public Homo sapiens 1 CCDC30 24 110 108 CCDS HistoryNCBI Gene:728621Re-query CCDS DB by CCDS ID:30690.1Re-query CCDS DB by GeneID:728621See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30690.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342022.8 ENSP00000339280.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000342022.8Link to Ensembl Protein Viewer:ENSP00000339280.4Re-query CCDS DB by Nucleotide ID:ENST00000342022Re-query CCDS DB by Protein ID:ENSP00000339280
Original member Current member NCBI NM_001080850.4 NP_001074319.1 Accepted alive Link to Nucleotide Sequence:NM_001080850.4Link to Protein Sequence:NP_001074319.1Re-query CCDS DB by Nucleotide ID:NM_001080850Re-query CCDS DB by Protein ID:NP_001074319Link to BLAST:NP_001074319.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074319.1 783 Q5VVM6-1 783 100% 0 0

Chromosomal Locations for CCDS 30690.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 42536485 42536601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42539173 42539310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42545410 42545579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42556156 42556405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42566296 42566475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42577020 42577229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42581360 42581514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42589321 42589483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42610978 42611090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42637237 42637378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42642473 42642609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42644693 42644807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42646135 42646317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42653376 42653443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42653818 42654028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2352 nt):
ATGAGCCAAGAAAAAAATGAAATGTTTGAAAGTGAGTGGTCAAAAGAGAGAGAGAGAGAGAAGCAGTTGG
CA
TCTGGTCTTGACACTGCAGAGAAGGCCTTGAAAGTTGAAAGTGAGGAATTGCAAAAATCAAAGTCAGA
G
CTTATATGCCTTTATAATGAAGTTCACAATCTTCCAGGGGAATCAGAAAGCAAAGACCATTTTTTAATA
GCA
TGTGACCTGTTACAAAGAGAGAATTCTGAATTAGAAACAAAGGTCTTGAAGCTTTCACAAGAATTTG
CA
CAATTAAATCATTTTACTCTAGGGGGAAAAACTGCACCTTCTAATTTAATTACAAGTGAAAATACCTG
T
AAAGATCCTGAATCTAATGAACCAATTTTGGAAACAGAAATTCAAAGCCGAAAGGAAGAGACAGAGGAA
CTC
TGTCCCAAATTAGGAGAAAGAAAGCAGAAGGAAATTCCAGAGGAGTCAGTAAAGGAGGGCAGTTTTC
CA
AGAGAGGGGCAGAAGGAGGAGGGCTCACAACAGAATCGAGATATGAAAGATGAAGAAAAAGAACAGCA
G
TTAACCATGAAGCCTGAGGAAATTGTGAGGCTTAGAGAAGAGCTGAGCCATATAAATCAGAGCCTTCTT
CAG
TCTCAGAGCTCTGGGGATAGTTCAGATGACAGTGGTGCCCAGCATCCATCATCTGGAGAAAAACTAA
AA
TACAACCAGCAAGGGGAAGTACAACAACTTCACCAGAATTTGCACCGGCTCCAGATTCTATGCAACTC
A
GCTGAAAATGAGCTTCGATATGAACGAGGGCAGAACTTGGACTTAAAGCAACATAATAGCTTACTTCAG
GAA
GAAAACATTAAGATAAAGATTGAACTAAAGCATGCCCAACAGAAGTTATTAGACAGCACAAAGATGT
GC
TCTTCACTCACGGCAGAGTACAAGCACTGTCAGCAGAAAATCAAGGAACTGGAGTTGGAAGTACTTAA
A
CACACTCAGAGCATTAAATCACAGAACAACCTACAGGAAAAGCTGGTTCAGGAGAAATCTAAAGTTGCT
GAT
GCAGAGGAAAAGATTTTGGACCTGCAGCGGAAATTAGAACATGCTCATAAAGTCTGTCTCACAGACA
CT
TGTATTTCAGAGAAGCAGCAGCTAGAGGAAAAGATAAAAGAAGCAACACAAAATGAAGCTAAAGTAAA
G
CAACAATATCAAGAAGAACAACAGAAGAGGAAACTTCTATATCAGAACGTAGATGAGTTACACAGGCAA
GTG
AGAACCTTACAAGATAAAGAAAATCTACTGGAAATGACCTGTTCTCAGCAACAATCCAGAATTCAGC
AA
CAAGAGGCCCTACTTAAACAACTGGAAAATGAAAAAAGAAAATATGATGAGCATGTCAAAAGCAACCA
G
GAATTGTCAGAGAAGCTATCTAAGCTACAGCAAGAGAAGGAAGCTCTACGTGAAGAATATTTGCGATTA
TTG
AAGCTGCTTAATGTCCATGTGAGAAACTATAATGAGAAACATCACCAACAAAAAGTCAAGCTTCAAA
AA
GTCAAGTATCGTTTAACTAATGAAGTAGAACTACGAGATAAGAGAATTAACCAATTTGAAGATGAAAT
T
GGAATCCTGCAACATAAAATAGAAAAGGAGAAGGCAATACAGGACCAGATCACTGCCCAAAATGATACC
CTG
CTTCTAGAAAAAAGGAAACTTCAGGAGCAAGTCATAGAGCAAGAACAGTTGATCCACAGCAACAAAT
GG
ACGATATCTTCCATCCAGAGCAGGGTACTTTACATGGATAAAGAAAATAAGCAATTACAGGAAAATAG
T
CTTCGTCTCACACAGCAGATTGGCTTCTTAGAGCGAATTATAAGGAGCATCCATATTCGCAGAGGAGAG
AAT
CTTAAGGAGTTTCCTGTTCCAAAATGGTGGCATAGAGGCAAGCTGGCTTCTCTCCCTCCAACAAAGA
AA
CAGAAAGAAATATACAGCACTGAGGTCTTCACCAGCAACAATGCAGAACTCCAGCATGAGGATGAGTC
A
GTTCCTGAGGCCACAGAGAAGTGGAAACACTCTGAGCAGATGGAAACAACAATTAGTGACATCCTTGAA
TCC
GAAGTAGTGAATGAAATATTGCCTTTATCAAACTCCAGTTTTTCAGGAAAAGGTTTGGTAGAGTCAT
TT
GCAAGTCTTCAAGAGACTGAAGAGATCAAGTCAAAAGAAGCAATGGCAAGTTCAAAGTCCCCTGAAAA
G
TCTCCTGAGAATCTTGTGTGTTCACAGAATTCTGAGGCTGGATACATAAATGTGGCTTCTCTGAAGGAG
ACA
CATGGTATACAAGAACAAGACCAAAAGTCAGAACTATAA


Translation (783 aa):
MSQEKNEMFESEWSKEREREKQLASGLDTAEKALKVESEELQKSKSELICLYNEVHNLPGESESKDHFLI
A
CDLLQRENSELETK
VLKLSQEFAQLNHFTLGGKTAPSNLITSENTCKDPESNEPILETEIQSRKEETEE
L
CPKLGERKQKEIPEESVKEGSFPREGQKEEGSQQNRDMKDEEKEQQLTMKPEEIVRLREELSHINQSLL
Q
SQSSGDSSDDSGAQ
HPSSGEKLKYNQQGEVQQLHQNLHRLQILCNSAENELRYERGQNLDLKQHNSLLQ
E
ENIK
IKIELKHAQQKLLDSTKMCSSLTAEYKHCQQKIKELELEVLKHTQSIKSQNNLQEKLVQEKSKVA
D
AEEK
ILDLQRKLEHAHKVCLTDTCISEKQQLEEKIKEATQNEAKVKQQYQEEQQKRKLLYQNVDELHRQ
V
RTLQDKENLLEMTCSQQQSRIQQQEALLKQLENEKRKYDE
HVKSNQELSEKLSKLQQEKEALREEYLRL
L
KLLNVHV
RNYNEKHHQQKVKLQKVKYRLTNEVELRDKRINQFEDEIGILQHKIEKEKAIQDQITAQNDT
L
LLEKRKLQEQVIEQEQLIHSNKWTISSIQS
RVLYMDKENKQLQENSLRLTQQIGFLERIIRSIHIRRGE
N
LKEFPVPKWWHRGKLASLPPTKKQKEIYSTEVFTSNNAELQHEDESVPEATEKWKHSEQM
ETTISDILE
S
EVVNEILPLSNS
SFSGKGLVESFASLQETEEIKSKEAMASSKSPEKSPENLVCSQNSEAGYINVASLKE
T
HGIQEQDQKSEL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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