NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30481.1 Public Mus musculus X Klf8 23 108 98 CCDS HistoryNCBI Gene:245671Re-query CCDS DB by CCDS ID:30481.1Re-query CCDS DB by GeneID:245671See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30481.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039545.4 ENSMUSP00000044317.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039545.4Link to Ensembl Protein Viewer:ENSMUSP00000044317.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000039545Re-query CCDS DB by Protein ID:ENSMUSP00000044317
Original member Current member EBI ENSMUST00000112574.8 ENSMUSP00000108193.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112574.8Link to Ensembl Protein Viewer:ENSMUSP00000108193.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112574Re-query CCDS DB by Protein ID:ENSMUSP00000108193
Original member NCBI NM_001357183.1 NP_001344112.1 Updated not alive Link to Nucleotide Sequence:NM_001357183.1Link to Protein Sequence:NP_001344112.1Re-query CCDS DB by Nucleotide ID:NM_001357183Re-query CCDS DB by Protein ID:NP_001344112
Current member NCBI NM_001357183.2 NP_001344112.1 Accepted alive Link to Nucleotide Sequence:NM_001357183.2Link to Protein Sequence:NP_001344112.1Re-query CCDS DB by Nucleotide ID:NM_001357183Re-query CCDS DB by Protein ID:NP_001344112Link to BLAST:NP_001344112.1
Original member NCBI NM_173780.5 NP_776141.1 Updated not alive Link to Nucleotide Sequence:NM_173780.5Link to Protein Sequence:NP_776141.1Re-query CCDS DB by Nucleotide ID:NM_173780Re-query CCDS DB by Protein ID:NP_776141
Current member NCBI NM_173780.6 NP_776141.1 Accepted alive Link to Nucleotide Sequence:NM_173780.6Link to Protein Sequence:NP_776141.1Re-query CCDS DB by Nucleotide ID:NM_173780Re-query CCDS DB by Protein ID:NP_776141Link to BLAST:NP_776141.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344112.1 355 Q8BLM0 355 100% 0 0
NP_776141.1 355 Q8BLM0 355 100% 0 0

Chromosomal Locations for CCDS 30481.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 153370847 153370918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153382509 153383070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153384595 153384706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153385374 153385513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153392687 153392868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGATAAATTCATAGACAACATGGATGTCCGAATTAAATCAGAAAGTGGTTCGATGCAGGTATTCAAAC
AGGTCACTGGCCCTGTTCCGACCAGAGATCCTTCTGCGAGAGCAGACAGAAGGAATATGACTTCTCCATC
ATTCCTGGCTGCCAGCCCAATGGAGAACCCAGCTCTGTTTAATGATATCAAGATCGAGCCCCCAGAAGAG
CTCCTGGAGAGTGATTTCAACATGCCCCAGGTGGAACCTGTTGATCTCTCCTTTCACAAACCGAAGGCTC
CGCTCCAGCCTGCTAGCATGCTGCAAGCTCCAATCCGTCCTCCCAAGCCACCGACTGCACCTCAAGCCAT
TATGGTGCCTACTTCAGCTGACACAGTCACTTCGGCAGCCATTCCTACTGTTCTCACTCCGGGCTCTATC
CTGGCCTCGTCTCAGGGGACCGGTGGCCAGCCGATTTTACATGTGATCCACACCATCCCCTCAGTCAGTT
TGCCAAATAAGATGAGTGGACTAAAGACAATCCCACTGGTGGTCCAGTCTTTGCCTATGGTCTATACCAG
TCTGCCTACAGATGGGAGCCCTGCAGCCATTACTGTCCCACTCATTGGAGGAGACGGCAAAAGTGCTGGA
TCGGTCAAAGTTGACCCCGCCTCCATGTGCCCACTGGAGTTTCCAAGTGATAGTGATGAGAGTGCAATTG
AAAGTGGCTCTTCAGCCTTACAGAGTCTCCAGGGATTTCATCATGAGCCAGCGACAATGGTCCACATGCA
GGGAGAAGAGTCTCTTGACTTAAAGAGAAGACGGATTCATCAGTGTGACTTTGCAGGATGCAGCAAAGTG
TACACCAAAAGCTCTCACCTGAAAGCTCACCGCAGAATCCATACAGGAGAGAAGCCTTACAAGTGCACCT
GGGATGGCTGTTCCTGGAAATTTGCTCGCTCGGATGAGCTTACTCGCCATTTCCGTAAGCACACGGGCAT
CAAGCCATTCCGGTGCACAGACTGCAACCGCAGTTTTTCTCGATCTGACCACTTGTCCCTCCACCGCCGG
CGTCATGACACCATGTGA

Translation (355 aa):
MDKFIDNMDVRIKSESGSMQVFKQVTGPVPTRDPSARADRRNMTSPSFLAASPMENPALFNDIKIEPPEE
LLESDFNMPQVEPVDLSFHKPKAPLQPASMLQAPIRPPKPPTAPQAIMVPTSADTVTSAAIPTVLTPGSI
LASSQGTGGQPILHVIHTIPSVSLPNKMSGLKTIPLVVQSLPMVYTSLPTDGSPAAITVPLIGGDGKSAG
SVKVDPASMCPLEFPSDSDESAIESGSSALQSLQGFHHEPATMVHMQGEESLDLKRRRIHQCDFAGCSKV
YTKSSHLKAHRRIHTGEKPYKCTWDGCSWKFARSDELTRHFRKHTGIKPFRCTDCNRSFSRSDHLSLHRR
RHDTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH