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Report for CCDS30448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30448.1 Public Mus musculus X Acsl4 23 108 98 CCDS HistoryNCBI Gene:50790Re-query CCDS DB by CCDS ID:30448.1Re-query CCDS DB by GeneID:50790See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30448.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033634.4 ENSMUSP00000033634.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033634.4Link to Ensembl Protein Viewer:ENSMUSP00000033634.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033634Re-query CCDS DB by Protein ID:ENSMUSP00000033634
Original member Current member EBI ENSMUST00000112907.7 ENSMUSP00000108528.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112907.7Link to Ensembl Protein Viewer:ENSMUSP00000108528.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112907Re-query CCDS DB by Protein ID:ENSMUSP00000108528
Original member Current member NCBI NM_207625.2 NP_997508.1 Accepted alive Link to Nucleotide Sequence:NM_207625.2Link to Protein Sequence:NP_997508.1Re-query CCDS DB by Nucleotide ID:NM_207625Re-query CCDS DB by Protein ID:NP_997508Link to BLAST:NP_997508.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997508.1 711 Q9QUJ7-1 711 100% 0 0

Chromosomal Locations for CCDS 30448.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 142320677 142320834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142327976 142328133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142328848 142328962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142332192 142332383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142333670 142333744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142338884 142339056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142339950 142340089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142341335 142341406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142343074 142343197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142343307 142343457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142345428 142345566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142349002 142349111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142350960 142351137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 142351379 142351729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGAACCTTAAGCTAAATGTGCTCACCATTATATTGCTGCCTGTCCACTTGTTAATAACAATATACAGTG
CCCTTATATTTATTCCATGGTATTTTCTTACCAATGCCAAGAAGAAAAACGCTATGGCAAAGAGAATAAA
AGCTAAGCCCACTTCAGACAAACCTGGAAGTCCATATCGCTCTGTCACACACTTCGACTCACTAGCTGTC
ATAGACATCCCTGGAGCAGATACTCTGGATAAATTATTTGACCATGCTGTAGCCAAATTTGGGAAGAAGG
ACAGCCTTGGAACCCGGGAGATCCTGAGTGAAGAAAATGAAATGCAGCCAAATGGAAAGGTTTTTAAGAA
GTTAATTCTTGGGAATTATAAATGGATAAACTATCTTGAAGTGAACTGCAGAGTGAATAACTTTGGAAGT
GGCCTCACTGCATTGGGACTGAAACCAAAGAACACCATTGCCATTTTCTGTGAGACCAGGGCAGAGTGGA
TGATTGCAGCACAGACTTGCTTTAAGTACAACTTTCCACTTGTGACTTTATATGCCACACTTGGCAGAGA
AGCTGTAGTTCATGGATTAAATGAATCTGAGGCTTCCTATCTGATTACTAGTGTTGAGCTTCTGGAAAGC
AAACTGAAGGCGGCCTTAGTAGATATCAATTGTGTTAAACATATCATTTATGTGGATAATAAGACTATCA
ATAGAGCAGAGTACCCTGAGGGGCTTGAAATTCACAGCATGCAATCAGTAGAGGAGCTGGGAGCCAAGCC
AGAAAACTTGAGCGTTCCTCCAAGTAGACCAACCCCTTCAGACATGGCCATTGTCATGTACACCAGTGGT
TCTACGGGCCGCCCCAAGGGAGTGATGATGCATCATAGCAATTTGATTGCTGGAATGACAGGCCAGTGTG
AACGTATCCCTGGACTAGGACCGAAGGACACATATATTGGCTACTTACCTTTGGCTCATGTGCTGGAACT
GACAGCAGAGATATCATGCTTTACCTATGGCTGTAGGATTGGATACTCTTCACCCCTTACACTGTCTGAC
CAGTCCAGCAAAATCAAGAAGGGAAGCAAGGGTGATTGTACTGTACTGAAACCCACACTTATGGCCGCTG
TTCCGGAAATCATGGATAGAATTTATAAGAATGTTATGAGCAAGGTTCAAGAGATGAATTATGTTCAGAA
AACTCTATTTAAAATCGGGTATGATTACAAATTAGAGCAAATCAAGAAAGGCTATGACGCCCCTCTTTGT
AATCTGATACTGTTTAAAAAGGTGAAGGCTCTGCTGGGAGGGAATGTCCGCATGATGCTGTCTGGCGGCG
CGCCACTGTCCCCTCAGACACACCGATTCATGAATGTCTGCTTCTGCTGCCCCATTGGTCAGGGATATGG
GCTGACAGAATCATGTGGTGCTGGAACAGTTACTGAAGTTACTGACTACACTACTGGAAGAGTTGGAGCT
CCTCTTATTTGCTGTGAAATTAAACTGAAAGACTGGCAGGAAGGTGGTTATACAGTTCATGATAAGCCGA
ACCCCAGAGGTGAGATTGTGATCGGTGGCCAGAATATCTCCATGGGATATTTTAAAAACGAAGAGAAAAC
AGCAGAAGATTATTGTGTTGATGAAAATGGACAAAGGTGGTTTTGCACTGGCGATATTGGAGAATTCCAT
CCTGATGGATGCTTACAGATTATAGATCGTAAGAAAGATCTGGTAAAGTTACAAGCAGGAGAATATGTAT
CTCTTGGGAAAGTAGAAGCTGCACTGAAGAATTGTCCACTGATCGACAACATCTGTGCTTTTGCCAAAAG
TGACCAGTCCTATGTGATCAGTTTTGTGGTTCCTAACCAGAAAAAGTTGACTCTTTTGGCACAACAGAAG
GGGGTAGAAGGATCTTGGGTTGATATTTGCAATAATCCCGCCATGGAAGCTGAAATACTGAAAGAAATTC
GAGAAGCTGCAAATGCCATGAAATTGGAGCGATTTGAAATTCCGATCAAGGTTCGGTTAAGCCCAGAGCC
ATGGACCCCCGAGACTGGTTTGGTAACAGATGCCTTCAAGCTGAAAAGGAAGGAGTTGAAGAACCATTAT
CTCAAAGACATTGAGCGAATGTATGGGGGCAAATAA

Translation (711 aa):
MNLKLNVLTIILLPVHLLITIYSALIFIPWYFLTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAV
IDIPGADTLDKLFDHAVAKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWINYLEVNCRVNNFGS
GLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGREAVVHGLNESEASYLITSVELLES
KLKAALVDINCVKHIIYVDNKTINRAEYPEGLEIHSMQSVEELGAKPENLSVPPSRPTPSDMAIVMYTSG
STGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSD
QSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYVQKTLFKIGYDYKLEQIKKGYDAPLC
NLILFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCFCCPIGQGYGLTESCGAGTVTEVTDYTTGRVGA
PLICCEIKLKDWQEGGYTVHDKPNPRGEIVIGGQNISMGYFKNEEKTAEDYCVDENGQRWFCTGDIGEFH
PDGCLQIIDRKKDLVKLQAGEYVSLGKVEAALKNCPLIDNICAFAKSDQSYVISFVVPNQKKLTLLAQQK
GVEGSWVDICNNPAMEAEILKEIREAANAMKLERFEIPIKVRLSPEPWTPETGLVTDAFKLKRKELKNHY
LKDIERMYGGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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