NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30341.1 Public Mus musculus X Fnd3c2 23 108 98 CCDS HistoryNCBI Gene:331491Re-query CCDS DB by CCDS ID:30341.1Re-query CCDS DB by GeneID:331491See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091282.4 ENSMUSP00000088827.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091282.4Link to Ensembl Protein Viewer:ENSMUSP00000088827.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091282Re-query CCDS DB by Protein ID:ENSMUSP00000088827
Original member Current member NCBI NM_001033424.3 NP_001028596.2 Accepted alive Link to Nucleotide Sequence:NM_001033424.3Link to Protein Sequence:NP_001028596.2Re-query CCDS DB by Nucleotide ID:NM_001033424Re-query CCDS DB by Protein ID:NP_001028596Link to BLAST:NP_001028596.2

Chromosomal Locations for CCDS 30341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 106235699 106235995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106236833 106236954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106237687 106237853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106238408 106238620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106238909 106239183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106243226 106243332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106243751 106243853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106243977 106244095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106244765 106244836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106245461 106245599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106245756 106245842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106246849 106247023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106247109 106247230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106247963 106248016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106248547 106248685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106249108 106249167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106250683 106250819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106251115 106251170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 106252026 106252407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2826 nt):
ATGGCTGACAATAATGCAGACACTAACCCTACTGACAGAATCACTAGTTCTTCTGCTCATGCCACAATCA
TTTCTACCTCAAATGCAGGCTTTTACACTGACATCAATAACAGTATTATAGGCCCTTCCATAAGTACTTG
TAATCAAGTCACATCTGATGAAACTCAGGAACCACCAAATACTAAGAGTATTTCAAGTTGTACTTCTGAG
AATGCTTGCAACACTTTCATCTCAACTAATGATGGCCTCAGACCTTCTGATGTTGGCAGCACTTCTGAAA
ACAATCATGGAGAAACAGAGGCTAACATGGGAGCTGGAGACAATAAGCAGATATTAGGTGAAAACCAAAA
GAAGAGTCAGTCGTCAAATGCATCACTGAAAGAACACAATACAGAGAACGGAACACAGCCATGTTGTTTT
GCCATTGGAAAACCTGTGGTTTCTAATATTCAAACCCGATCTGCTACTGTTTCATGGACTCTGAAGAGTA
ATGAAAAATATGATATTAATTCTATGTCATTTGAATTGGCACTGTACACCAGTGATGAAAATGGAATCTA
TGAAAACATTTATACTGGTGATGGCGTTAGTGTAGCCCTACAAGATCTACAACCTAGCATGGTCTACTTT
TTAAGAGTAACAACCATGAGAGGTGCAGAACACAGAAGTGTGTCTGAAGTGGTTAGCTTCACAACACCAG
GCTGTGAACCAGACCCTCCTCTTGCACCCACACTGATCAGCAGAACCAAGAACAGCCTGAGTTTACAATG
GAAAGGTTCCAATGAAAATGGATCTAAAATAAGCAGCTTTCTTTTGGAATGGGATGAGGGTAAAGGTGAA
GACTTCAAAAGTTGTTACAGTGGACGCCTGAAACAGCACACGCTATTTAAACTGAACCCTTCAACAAAGT
ATTCCTTCAGATTAGCTGCCAAAAATGACTTTGGCTGCAGTAATTTCAGTGAAACAGCAGTCTTCTATAC
ATCAGGAAAGGCGCCTACAGCACCACTTCCACCTAAGTTGAAAGAAGCAGGAATCTATAGTTTGTCTCTA
GAGTGGTGTGCCCCAACAAACCCAAACCCAAATGACACTCTTACTTATGTGCTAGAGATGGAGGAAGAAA
ACTTTGGAATAGGTTTTAAACCTGCATATGATGGAGAAGACCTCACCTGCACCGTACGAAATCTGCAGAG
AAATACTACATACAAGTTTCGGATTTTTGCCTGCAATCTGGATGGAAGGAGTAAACCCAGTGGAGAAGTA
AAATATACTACTCTTCCAGCTAGGCCTGGATGTCCTAAAAAGCCATACGTAGTGGGAATGATTCATGCAC
ACCAAGTGACAATTGGATGGGACTTGCCCAAAGACAACGGTGGAATGAACATTTCAAGTTACAGCCTAGA
AGTTTGTGAAAATTCAGATGGGGCAAATCTCTGGAAAATAATCTACAATGGCACTCAACAGGAATTTCTG
TATAATGACCTCCAAGCAGCCACCACATATAAACTGAGAGTCTTTTGCACATCACCTGCAGGCCAAAGCC
GTCCTTCAGATGTATTGACAATTCAGACGCCTACTCTTCCTCCCGAGTCTTGCCGTTCACAGCCCTTACG
TGGTAAAACCAAGGGCAAGGATGCCAACCTTCCTGACAATCATTCTGTTAATGGGAAGCCGGAAGCACAT
GTGCGTGGCAAAAAAGCAAAAGGTCCTCATCAGGACAGAAAGGTGCACCCCAGCTCTGAAAAGAAATGTG
CAGCTGTGGATACAGTTGGGGTTGGAATGTTTGGAGGAACTGCAAAAGTGACTTCACCTGGAACCATCCC
AGGAAGGGTCCCTGTGTTACAAGAAGTTGAAAACAGAGTGCCTGCCAAGCTATCATCAACTTGCATAGCT
ATCCGCTGGGAGGAGCCAGACTGTCATGGCTCTCCTATCACTGGATATAACATTGAATATGAAGATAAAA
AAATCGTGACTGTCAAAAGAATAACCGAGTATGTTCTGAAAGATCTACAACCTAATACTACATACAGAAT
CAGAATTCAAGCTATCAATCATTATGGACTAAGCCCTTTTAGCCCATCAATAAGATGCAAAACCAAACCA
CTACCACCAGAGCCTCCACAGCTTAATTGTGTGGTCTATGGACACCAGAGTCTCAGACTCAAATGGGGCA
CTGTCTCAAGCAAAAAAAAACTTGACTACTTTATCAATTACAACTTACTAATGGAAGATCGATCTGGCAG
ATTTTCTGTCATTTACCGTGGGCCGGATGTGACTCACAAAGTGCAAAAGTTGAGTGAGTATACAGAATAC
AAGTTTAAAATCCAGGCATGTAATGAAGCTGGGGAAGGACCAGAGTCTGACATCTACACTTTCACTACTA
CAAAGTCCCCACCCACTGCACTGAAAGCACCTAAAGTTCATCCACTGAATAACAACTGTTGTGAGATCAA
ATGGGAGTCTTTGGAGCCAATTGAAGGTGATCCCATTATTTACTGTCTTCAAGTCAACACTGGAAAAAAG
GCTAATCAGATTTACAAAGGACCGAACACTTCCTTTTCCTTTTCCAACTATCATGCAAATTCACGCTATC
GCTTCAAGGTCTGTGCAGGACGCCGATATGAAACCTCCAATGGTCTTCAAGAGCTGTGGGGGCCATATAG
TCCCAGTGCTCTTTTCTCAACTTATAAGCATCACTCCGGGCATGGCAAAGGCAGTGGGGGTAAAGGAAAA
GGCAAACACAATGGGAAAGTGAGAAAGTACAGGATAGGGTTCGCACTTATTGCTATTTTGTGTGCTGTTG
CTATTCAGTATTTCCTGTTCAAATAG

Translation (941 aa):
MADNNADTNPTDRITSSSAHATIISTSNAGFYTDINNSIIGPSISTCNQVTSDETQEPPNTKSISSCTSE
NACNTFISTNDGLRPSDVGSTSENNHGETEANMGAGDNKQILGENQKKSQSSNASLKEHNTENGTQPCCF
AIGKPVVSNIQTRSATVSWTLKSNEKYDINSMSFELALYTSDENGIYENIYTGDGVSVALQDLQPSMVYF
LRVTTMRGAEHRSVSEVVSFTTPGCEPDPPLAPTLISRTKNSLSLQWKGSNENGSKISSFLLEWDEGKGE
DFKSCYSGRLKQHTLFKLNPSTKYSFRLAAKNDFGCSNFSETAVFYTSGKAPTAPLPPKLKEAGIYSLSL
EWCAPTNPNPNDTLTYVLEMEEENFGIGFKPAYDGEDLTCTVRNLQRNTTYKFRIFACNLDGRSKPSGEV
KYTTLPARPGCPKKPYVVGMIHAHQVTIGWDLPKDNGGMNISSYSLEVCENSDGANLWKIIYNGTQQEFL
YNDLQAATTYKLRVFCTSPAGQSRPSDVLTIQTPTLPPESCRSQPLRGKTKGKDANLPDNHSVNGKPEAH
VRGKKAKGPHQDRKVHPSSEKKCAAVDTVGVGMFGGTAKVTSPGTIPGRVPVLQEVENRVPAKLSSTCIA
IRWEEPDCHGSPITGYNIEYEDKKIVTVKRITEYVLKDLQPNTTYRIRIQAINHYGLSPFSPSIRCKTKP
LPPEPPQLNCVVYGHQSLRLKWGTVSSKKKLDYFINYNLLMEDRSGRFSVIYRGPDVTHKVQKLSEYTEY
KFKIQACNEAGEGPESDIYTFTTTKSPPTALKAPKVHPLNNNCCEIKWESLEPIEGDPIIYCLQVNTGKK
ANQIYKGPNTSFSFSNYHANSRYRFKVCAGRRYETSNGLQELWGPYSPSALFSTYKHHSGHGKGSGGKGK
GKHNGKVRKYRIGFALIAILCAVAIQYFLFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH