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Report for CCDS3008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3008.1 Public Homo sapiens 3 ILDR1 24 110 108 CCDS HistoryNCBI Gene:286676Re-query CCDS DB by CCDS ID:3008.1Re-query CCDS DB by GeneID:286676See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3008.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273691.7 ENSP00000273691.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000273691.7Link to Ensembl Protein Viewer:ENSP00000273691.3Re-query CCDS DB by Nucleotide ID:ENST00000273691Re-query CCDS DB by Protein ID:ENSP00000273691
Original member Current member NCBI NM_175924.4 NP_787120.1 Accepted alive Link to Nucleotide Sequence:NM_175924.4Link to Protein Sequence:NP_787120.1Re-query CCDS DB by Nucleotide ID:NM_175924Re-query CCDS DB by Protein ID:NP_787120Link to BLAST:NP_787120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_787120.1 502 Q86SU0-2 502 100% 0 0

Chromosomal Locations for CCDS 3008.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 121988367 121988408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121993150 121993970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122001308 122001454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122001745 122001864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122005244 122005393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122006991 122007161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122022020 122022077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGGCATGGCCCAAACTGCCCGCACCTTGGCTGCTGCTCTGCACCTGGCTCCCAGCAGGGTGCCTGTCCT
TGCTTGTGACGGTCCAGCACACAGAACGCTATGTCACCCTGTTTGCCTCTATCATCCTCAAATGTGACTA
CACCACCTCTGCCCAGCTCCAGGACGTGGTGGTGACATGGCGCTTCAAGTCCTTCTGCAAGGACCCTATC
TTTGACTACTACTCAGCGTCATACCAGGCAGCTTTATCCCTGGGCCAGGACCCATCCAATGACTGCAACG
ACAACCAGCGGGAAGTTCGCATAGTGGCCCAGCGGCGGGGGCAGAATGAGCCCGTGCTGGGGGTAGATTA
CCGGCAGCGCAAGATCACCATCCAGAACCGAGCAGATCTCGTGATAAATGAAGTGATGTGGTGGGACCAT
GGAGTGTATTACTGCACCATTGAGGCTCCAGGGGACACATCAGGAGACCCCGATAAGGAAGTAAAGCTCA
TCGTCCTACACTGGCTGACAGTGATCTTCATCATCCTGGGAGCCCTCCTCCTCCTGCTGCTGATTGGAGT
GTGCTGGTGCCAGTGCTGTCCTCAGTATTGCTGCTGCTATATCCGCTGTCCCTGCTGTCCTGCCCACTGC
TGCTGTCCTGAGGAAGATTTGTCCCTGCCGTCCAGCCTCCCGCAGATGCCAATGACCCAGACCACCAATC
AGCCTCCCATCGCCAATGGTGTCCTGGAGTATTTGGAGAAAGAACTGCGGAACCTCAACCTGGCCCAGCC
TCTGCCCCCTGACCTCAAAGGCAGATTTGGCCATCCCTGCAGCATGCTGTCCTCCCTGGGCTCTGAGGTC
GTGGAACGCAGAATCATCCACCTGCCCCCACTGATCAGAGACCTGTCATCCTCAAGGAGGACCAGTGACT
CCCTGCACCAGCAGTGGCTCACCCCAATTCCCTCCAGGCCCTGGGATCTGAGGGAGGGGAGAAGCCACCA
CCATTACCCTGATTTCCACCAGGAGCTCCAGGACCGGGGGCCAAAGTCTTGGGCATTGGAAAGAAGGGAG
TTGGACCCATCGTGGAGTGGAAGGCACCGTAGCTCTAGGCTGAATGGGTCACCCATACACTGGTCAGACA
GGGACAGCCTAAGCGATGTCCCCTCATCCAGTGAGGCACGCTGGCGGCCGAGCCACCCTCCTTTCAGGAG
CCGCTGTCAGGAGAGGCCCCGCAGGCCCAGCCCCCGGGAGAGCACTCAGAGGCACGGGAGACGACGCAGG
CACCGCAGCTACTCTCCTCCCTTGCCCTCCGGCCTCAGTTCCTGGAGCTCTGAAGAGGACAAGGAGAGGC
AGCCCCAGAGCTGGCGGGCCCACCGCCGCGGCTCGCACTCCCCACACTGGCCCGAGGAGAAGCCGCCTAG
CTACCGCTCACTTGATATCACTCCAGGCAAGAATAGCAGGAAAAAAGGGAGTGTGGAGAGGCGCTCGGAG
AAAGACAGCTCTCATAGTGGAAGGAGTGTGGTCATTTAG

Translation (502 aa):
MAWPKLPAPWLLLCTWLPAGCLSLLVTVQHTERYVTLFASIILKCDYTTSAQLQDVVVTWRFKSFCKDPI
FDYYSASYQAALSLGQDPSNDCNDNQREVRIVAQRRGQNEPVLGVDYRQRKITIQNRADLVINEVMWWDH
GVYYCTIEAPGDTSGDPDKEVKLIVLHWLTVIFIILGALLLLLLIGVCWCQCCPQYCCCYIRCPCCPAHC
CCPEEDLSLPSSLPQMPMTQTTNQPPIANGVLEYLEKELRNLNLAQPLPPDLKGRFGHPCSMLSSLGSEV
VERRIIHLPPLIRDLSSSRRTSDSLHQQWLTPIPSRPWDLREGRSHHHYPDFHQELQDRGPKSWALERRE
LDPSWSGRHRSSRLNGSPIHWSDRDSLSDVPSSSEARWRPSHPPFRSRCQERPRRPSPRESTQRHGRRRR
HRSYSPPLPSGLSSWSSEEDKERQPQSWRAHRRGSHSPHWPEEKPPSYRSLDITPGKNSRKKGSVERRSE
KDSSHSGRSVVI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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