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Report for CCDS30062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30062.1 Public Mus musculus X Slc25a5 23 108 98 CCDS HistoryNCBI Gene:11740Re-query CCDS DB by CCDS ID:30062.1Re-query CCDS DB by GeneID:11740See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30062.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016463.3 ENSMUSP00000016463.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016463.3Link to Ensembl Protein Viewer:ENSMUSP00000016463.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000016463Re-query CCDS DB by Protein ID:ENSMUSP00000016463
Original member Current member NCBI NM_007451.4 NP_031477.1 Accepted alive Link to Nucleotide Sequence:NM_007451.4Link to Protein Sequence:NP_031477.1Re-query CCDS DB by Nucleotide ID:NM_007451Re-query CCDS DB by Protein ID:NP_031477Link to BLAST:NP_031477.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031477.1 298 P51881 298 100% 0 0

Chromosomal Locations for CCDS 30062.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 36795731 36795841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36796843 36797329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36797736 36797876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36798387 36798544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGACAGATGCCGCTGTGTCCTTCGCCAAGGACTTCTTGGCCGGTGGAGTGGCCGCAGCCATCTCCAAGA
CA
GCGGTAGCACCCATCGAGAGGGTCAAGCTGCTGCTGCAGGTGCAGCATGCCAGCAAGCAAATCACGGC
A
GATAAGCAATACAAGGGCATCATAGACTGCGTGGTTCGTATCCCCAAGGAACAGGGAGTCCTGTCCTTC
TGG
CGTGGGAACCTGGCCAATGTCATCAGATACTTCCCCACCCAGGCTCTCAACTTTGCCTTCAAAGATA
AA
TACAAGCAGATCTTTCTGGGTGGTGTGGACAAGAGGACCCAGTTCTGGCGCTACTTTGCAGGGAACCT
G
GCATCAGGTGGTGCCGCTGGGGCTACATCCTTGTGCTTTGTGTACCCTCTTGATTTTGCCCGTACCCGT
CTA
GCAGCTGATGTGGGCAAAGCTGGAGCTGAAAGGGAATTCAAAGGCCTTGGTGACTGCCTGGTTAAGA
TC
TACAAATCTGATGGGATTAAGGGCCTGTACCAAGGCTTTAATGTGTCAGTACAGGGCATTATCATCTA
C
CGAGCTGCCTACTTTGGTATCTATGACACTGCAAAGGGAATGCTCCCAGATCCCAAGAATACTCACATC
TTC
ATCAGCTGGATGATTGCACAGTCTGTCACTGCTGTCGCTGGCCTGACTTCCTATCCTTTTGACACGG
TT
CGCCGTCGTATGATGATGCAGTCTGGACGCAAAGGAACTGATATCATGTACACAGGCACGCTTGACTG
C
TGGCGGAAGATCGCGCGCGATGAAGGGAGCAAGGCTTTTTTCAAGGGCGCATGGTCCAACGTTCTCAGA
GGC
ATGGGTGGCGCCTTTGTGCTTGTCTTGTATGATGAGATCAAGAAATACACATAA


Translation (298 aa):
MTDAAVSFAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVRIPKEQGVLSF
W
RGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTR
L
AADVGKAGAEREFKGLGDCLVKIYKSDGIKGLYQGFNVSVQGIIIYRAAYFGIYDTAK
GMLPDPKNTHI
F
ISWMIAQSVTAVAGLTSYPFDTVRRRMMMQSGRKG
TDIMYTGTLDCWRKIARDEGSKAFFKGAWSNVLR
G
MGGAFVLVLYDEIKKYT




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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  VEGA Genome Browser