NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30051.1 Public Mus musculus X Slc6a14 23 108 98 CCDS HistoryNCBI Gene:56774Re-query CCDS DB by CCDS ID:30051.1Re-query CCDS DB by GeneID:56774See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033414.7 ENSMUSP00000033414.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033414.7Link to Ensembl Protein Viewer:ENSMUSP00000033414.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033414Re-query CCDS DB by Protein ID:ENSMUSP00000033414
Original member Current member NCBI NM_020049.4 NP_064433.3 Accepted alive Link to Nucleotide Sequence:NM_020049.4Link to Protein Sequence:NP_064433.3Re-query CCDS DB by Nucleotide ID:NM_020049Re-query CCDS DB by Protein ID:NP_064433Link to BLAST:NP_064433.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064433.3 638 Q9JMA9 638 100% 0 0

Chromosomal Locations for CCDS 30051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 21715148 21715195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21716235 21716400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21719311 21719442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21721551 21721712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21722417 21722552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21724633 21724765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21726242 21726382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21731332 21731560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21733993 21734118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21736305 21736423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21736885 21736984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21737262 21737371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21739496 21739663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 21740944 21741090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGGACAGATTGAAGTGCCCGAACTTCTTCAAGTGCAGACAGAAGGAGAAAGTGACAGCTTCATCCGAGA
ACTTCCATGTTGGTGAAAATGATGAAAATCAGGAACGTGGTAACTGGTCCAAAAAGTCAGATTATCTTCT
TTCCATGGTTGGCTATGCAGTGGGATTGGGCAATGTGTGGAGATTCCCATATCTGACCTACACCAATGGC
GGAGGTGCTTTCTTGATACCCTATGCAATCATGCTAGCATTGGCTGGTCTGCCTTTGTTCTTTCTGGAAT
GTTCACTGGGACAATTTGCTAGCTTAGGTCCAGTTTCAGTTTGGAGGATTTTGCCACTGTTTCAAGGTGT
GGGAATCACGATGGTCCTGATATCCGTTTTTGTGGCAATCTATTATAATGTCATAATTGCCTACAGCCTT
TACTACTTGTTTGCTTCTTTTCAAAGTGTATTGCCGTGGGCAAATTGTTCTTCTTGGGCAGACGAAAACT
GTAGCAGAACACCAATAGTAACTGGCTGTAATGTGAGCATAGGGGCAGGAGAGATGTTTATGAATATAAG
CTGGGTAAATACCAACAATCTCACCTGCTTGAATGGTAGTGAAGTTTTTCGGCCAGGACAACTTCCCAGT
GAACAGTATTGGGATAAAGTGACACTTCAGAGGTCAAGTGGAATGGATGAAACTGGAGTTGTTGTGTGGT
ATTTAGCACTTTGCCTTCTTCTGGCTTGGCTCATAGTTGGAGCAGCACTGTTTAAAGGAATCAAATCCTC
TGGCAAGGTGGTATATTTTACAGCTCTTTTCCCATATGTGGTCCTTCTCATTCTGTTAATACGAGGTGCA
ACTTTGGAGGGTGCATCAAAAGGCATTTCATATTACATTGGAGCACAGTCAAATTTTACAAAACTAAGAG
AAGCTGAGGTCTGGAAGGATGCTGCCACTCAGATATTTTATTCCCTTTCTGTGGCTTGGGGTGGCCTAGT
GGCTCTGTCATCTTACAACAAGTTCAACAACAACTGTTACTCTGATGCCATTATAGTTTGCTTGACAAAC
TGCCTCACTAGTGTGTTTGCTGGATTTGCTATATTTTCTATTCTGGGACACATGGCTCATATATCTGGAA
AAGAAGTCTCTCAAGTTGTAAAATCAGGATTTGACTTGGCATTCATTGCCTATCCTGAAGCTCTAGCTCA
ACTCCCAGCTGGTCCATTCTGGTCCATATTATTTTTCTTCATGCTTTTAACATTGGGCCTTGATTCTCAG
TTTGCTTCTATTGAAACAATTACAACAACATTTCAAGATTTGTTTCCCAAAGCAATGAAACGCATGAGGG
TTCCTATAACTTTGGGATGCTGCTTGATTTTGTTTCTCCTTGGCCTCCTCTGTGTGACTCAGGCTGGAAT
TTACTGGGTTCATTTGATTGATCACTTCTGTGCTGGATGGGGAATTTTAATTGCTGCTATCTTGGAAATT
GCAGGAATCATCTGGATTTATGGAGGAAATAGATTCATTGAAGATATAGAAATGATGATTGGAGCAAAAA
GATGGATATTCTGGCTTTGGTGGAGAGCTTGCTGGTTTGTCATCACTCCTATTCTGTTGTCTGCAATTCT
AGTCTGGTCACTGGTGAAATTTCACAGACCTGATTATGCTGATATTCCATATCCTGACTGGGGAGTTGCT
CTTGGCTGGTGTATGATCATTTTCTGCATTATTTGGATACCAATTATGGCTATCATAAAAATAGTTCAGG
CAGAAGGAAACATACTTCAGCGTATCATAAGCTGCTGTAGACCAGCTTCGAACTGGGGTCCATACCTGGA
AAAACATCGTGGGGAGAGATACAGAGACATGGCTGAACCTGCAAAGGAGACTGACCACGAAATACCTACT
ATTAGTGGCAGTACAAAACCAGAATGA

Translation (638 aa):
MDRLKCPNFFKCRQKEKVTASSENFHVGENDENQERGNWSKKSDYLLSMVGYAVGLGNVWRFPYLTYTNG
GGAFLIPYAIMLALAGLPLFFLECSLGQFASLGPVSVWRILPLFQGVGITMVLISVFVAIYYNVIIAYSL
YYLFASFQSVLPWANCSSWADENCSRTPIVTGCNVSIGAGEMFMNISWVNTNNLTCLNGSEVFRPGQLPS
EQYWDKVTLQRSSGMDETGVVVWYLALCLLLAWLIVGAALFKGIKSSGKVVYFTALFPYVVLLILLIRGA
TLEGASKGISYYIGAQSNFTKLREAEVWKDAATQIFYSLSVAWGGLVALSSYNKFNNNCYSDAIIVCLTN
CLTSVFAGFAIFSILGHMAHISGKEVSQVVKSGFDLAFIAYPEALAQLPAGPFWSILFFFMLLTLGLDSQ
FASIETITTTFQDLFPKAMKRMRVPITLGCCLILFLLGLLCVTQAGIYWVHLIDHFCAGWGILIAAILEI
AGIIWIYGGNRFIEDIEMMIGAKRWIFWLWWRACWFVITPILLSAILVWSLVKFHRPDYADIPYPDWGVA
LGWCMIIFCIIWIPIMAIIKIVQAEGNILQRIISCCRPASNWGPYLEKHRGERYRDMAEPAKETDHEIPT
ISGSTKPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH