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Report for CCDS29723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29723.1 Public Mus musculus 19 Pum3 23 108 98 CCDS HistoryNCBI Gene:52874Re-query CCDS DB by CCDS ID:29723.1Re-query CCDS DB by GeneID:52874See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29723.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076219.5 ENSMUSP00000075573.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076219.5Link to Ensembl Protein Viewer:ENSMUSP00000075573.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000076219Re-query CCDS DB by Protein ID:ENSMUSP00000075573
Original member NCBI NM_177474.5 NP_803425.1 Updated not alive Link to Nucleotide Sequence:NM_177474.5Link to Protein Sequence:NP_803425.1Re-query CCDS DB by Nucleotide ID:NM_177474Re-query CCDS DB by Protein ID:NP_803425
Current member NCBI NM_177474.6 NP_803425.1 Accepted alive Link to Nucleotide Sequence:NM_177474.6Link to Protein Sequence:NP_803425.1Re-query CCDS DB by Nucleotide ID:NM_177474Re-query CCDS DB by Protein ID:NP_803425Link to BLAST:NP_803425.1

Chromosomal Locations for CCDS 29723.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 27390181 27390313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27394238 27394328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27396295 27396382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27398882 27399104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27399679 27399821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27412182 27412262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27415886 27415939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27416735 27416833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27418795 27418873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27420018 27420121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27421297 27421471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27422355 27422421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27422654 27422747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27423506 27423581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27424209 27424344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27425796 27426014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 27427037 27427121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGATGGAAGTCAAAGGGAAGAAAAAGTTTACAGGAAAGAGTCCACAGACATCACAAGGAAAGAATAAAT
TTCATAAGAACAGTGAGTCTAGTTCTTCAAAGACATTCCCAAGGAAAGCTGTTAAGGAAGGCGGACCTAA
AGTCACATCTAAGAACTTTGAGAAAGGTGCCACAAAACCTGGCAAGAAAGGTGTGAAGCAGTTCAAGAAC
AAGCCACAAGGGGGCAAAGGACCGAAGGACAAATTTCAGAAGGCAAATAAATTCAGCAAGAAGCGGAAAT
TCCAGCCAGATGGTGAAAGTGATGAATCAGGAGCCAAGAAACCCAAGTGGGATGACTTCAAAAAGAAGAA
GAAAGAGCTGAAGCAGAGCAGGCAGCTCAGTGACAAGACCAACTATGACATCGTGGTTCGAGCAAAGCAC
ATTTGGGAGAGCTTGAGAAGAAAAGATTGTGACAAGGAAAAACGGGTGAAGCTCATGAGTGATTTGCAGA
AGTTGATTCAAGGGAAAATTAAAACTATCGCCTTTGCACATGACTCGACGCGCGTGATCCAGTGCTTCAT
TCAGTATGGGAACGAGGAGCAGAGGAAGCAGGCTTTCCAAGAGTTGCAAGGCGACTTGGTTGAATTAAGT
AAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGGAAGTAAGCCACAAGTTGCGGAGA
TAATCAGAAGTTTTAAAGGTCATGTGAGGAAGATGCTGCGGCATTCGGAGGCATCGGCCATTGTGGAGTA
CGCATACAACGACAAAGCCATTTTGGAACAGAGGAACATGCTGACAGAGGAGCTCTATGGGAACACGTTT
CAGCTTTACAAGTCAGCAGATCACCCAACGCTGGACAAGGTGCTGGAGCTGCAGCCAGCAAAGCTAGAGC
TTATCATGGACGAGATGAAGCAGATTCTGACACCGATGGCCCAAAAGGAAGCTGTGATTAAGCACTCACT
CGTTCATAAAGTATTCTTGGACTTTTTTACCTACGCACCCCCAAAACCTCGATCAGAACTAATTGAAGCC
ATCCGGGAAGCAGTGGTGTACCTGGCCCACACACACGATGGCGCCAGAGTGGCCATGCACTGCCTGTGGC
ACGGCACACCCAAGGACAGGAAAGTGATCGTGAAAACGATGAAGACGTATGTGGAGAAGGTTGCCAATGG
CCAGTACTCTCACTTGGTTCTCCTGGCAGCGTTTGACTGTATTGATGATACTAAGCTTGTGAAGCAGATA
ATCATATCAGAAATCATCAGTTCCTTGCCCAGCATAGTTAATGACAAATACGGAAGGAAAGTCCTCTTGT
ACTTGATGAGCCCCAGAGACCCCGCCCACACGGTGCCCGAGCTCATCGAGCTTCTGCAGAAGGGTGATGG
CAACGCGCACAGCAAGAAGGACACTGCAATCCGCCGGCGTGAGCTCTTGGAGTCCATCTCTCCAGCTTTG
CTGAGCTACCTGCAAGGACACACTCAAGAGGTGGTGCTGGATAAGTCTGCATGTGTGCTGGTGTCTGACA
TGCTGGGATCTGCTACTGGAGATGTTCAGCCTGCTATGGATGCCATCGCCAGTTTGGCAGCAGCAGAACT
GCATCCTGGTGGCAAGGACGGAGAGCTTCATGTTGCTGAGCATCCTGCAGGACATCTGGTTCTCAAATGG
TTACTAGAGCAAGATAAAAAGATGAAAGAAAGCGGAAAGGAAGGTTGTTTTGCAAAAACCCTTGTAGAGC
GTGTTGGTATGAAGAACCTCAAGTCCTGGGCCAGCATCAACCGAGGTGCCATTATTCTTTCCAGCCTTCT
TCAGAGTTGTGACCAAGAAGTTGTAAACAAAGTCAAAGGTGGACTGAAACCCCTGATTCCTACCTTGGAA
AAAAACAAAAGCAGCAGCAGAGGCATCCAGACCCTGCTTGAGAAGCTGACTGCGTAG

Translation (648 aa):
MMEVKGKKKFTGKSPQTSQGKNKFHKNSESSSSKTFPRKAVKEGGPKVTSKNFEKGATKPGKKGVKQFKN
KPQGGKGPKDKFQKANKFSKKRKFQPDGESDESGAKKPKWDDFKKKKKELKQSRQLSDKTNYDIVVRAKH
IWESLRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVELS
KAKYSRNIVKKFLMYGSKPQVAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTF
QLYKSADHPTLDKVLELQPAKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKPRSELIEA
IREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQI
IISEIISSLPSIVNDKYGRKVLLYLMSPRDPAHTVPELIELLQKGDGNAHSKKDTAIRRRELLESISPAL
LSYLQGHTQEVVLDKSACVLVSDMLGSATGDVQPAMDAIASLAAAELHPGGKDGELHVAEHPAGHLVLKW
LLEQDKKMKESGKEGCFAKTLVERVGMKNLKSWASINRGAIILSSLLQSCDQEVVNKVKGGLKPLIPTLE
KNKSSSRGIQTLLEKLTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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