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Report for CCDS29495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29495.1 Public Mus musculus 19 Snx15 23 108 98 CCDS HistoryNCBI Gene:69024Re-query CCDS DB by CCDS ID:29495.1Re-query CCDS DB by GeneID:69024See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29495.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025702.13 ENSMUSP00000025702.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025702.13Link to Ensembl Protein Viewer:ENSMUSP00000025702.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025702Re-query CCDS DB by Protein ID:ENSMUSP00000025702
Original member Current member NCBI NM_026912.2 NP_081188.1 Accepted alive Link to Nucleotide Sequence:NM_026912.2Link to Protein Sequence:NP_081188.1Re-query CCDS DB by Nucleotide ID:NM_026912Re-query CCDS DB by Protein ID:NP_081188Link to BLAST:NP_081188.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081188.1 337 Q91WE1 337 100% 0 0

Chromosomal Locations for CCDS 29495.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6119863 6119954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6120486 6120743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6121379 6121522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6121783 6121930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6122040 6122155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6123830 6123950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6124153 6124188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6128049 6128147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGTCGCGCCAAGCGAAGGATGACTTCCTGCGACACTACACAGTCTCGGACCCTAGGACCCACCCCAAGG
GT
TACACAGAGTACAAAGTAACCGCTCAGTTCATCTCAAAGAAGGACCCAGAGGATATCAAAGAGGTAGT
A
GTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTC
CGT
CGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTGGGCGGTTTGAAGCCTCTGTGATCG
AG
GAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCTGCACTCAACAACAGCCC
C
CAACTCAAGGAGTTTTTCCGGGGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATC
CTG
CCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAAA
GG
AGGGGCCAGGAGGAGTTGGAGGTGCCAGTGGATCCCCTCCCGTCCAGCCCTGCCCAGGAGGCCTTGGA
C
CTTCTCTTCAGCTGTGACAGTACGGAGGAAGCTTCCAGCTCCCTGGCTCGAGGTCCCCTCTCTGAGGCT
GAA
CTTGCCCTTTTCGACCCTTACTCCAAAGAGGAAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGC
TG
GCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCCTGGGAGCCAGGAGGACAGGAGGAGGA
A
GAAGCTGAGGATGGAGAGCCTGCCCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTG
CGG
AATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGC
AG
GGTGTCTCAGGTGACCCATCCCCTGCCCGCCGGGAAGGTGTGAAGAAGAAGGCAGCCGAGTACCTGAA
G
CGGGCAGAGATGCTTCACACACACTTGCCCTAA


Translation (337 aa):
MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDIKEVVVWKRYSDFRKLHGDLAYTHRNLF
R
RLEEFPAFPRAQVF
GRFEASVIEERRKGAEDLLRFTVPIPALNNSPQLKEFFRGGEVTRPSEVSRDLRI
L
PPPLIPTPPPDEARLLQPLPAERRGQEELEVP
VDPLPSSPAQEALDLLFSCDSTEEASSSLARGPLSEA
E
LALFDPYSKE
ESTGPSPTHTGELAAIEVESKRLDQEPWEPGGQEEEEAEDGEPAPAYLGQATELITQAL
R
NEKAGAYAAALQGYQDGVHILLQGVS
GDPSPARREGVKKKAAEYLKRAEMLHTHLP



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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