NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29388.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29388.1 Public Mus musculus 18 Cbln2 23 108 98 CCDS HistoryNCBI Gene:12405Re-query CCDS DB by CCDS ID:29388.1Re-query CCDS DB by GeneID:12405See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29388.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068423.9 ENSMUSP00000068863.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068423.9Link to Ensembl Protein Viewer:ENSMUSP00000068863.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000068423Re-query CCDS DB by Protein ID:ENSMUSP00000068863
Original member Current member EBI ENSMUST00000122079.7 ENSMUSP00000113695.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122079.7Link to Ensembl Protein Viewer:ENSMUSP00000113695.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122079Re-query CCDS DB by Protein ID:ENSMUSP00000113695
Original member Current member EBI ENSMUST00000122464.7 ENSMUSP00000113996.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122464.7Link to Ensembl Protein Viewer:ENSMUSP00000113996.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122464Re-query CCDS DB by Protein ID:ENSMUSP00000113996
Original member Current member EBI ENSMUST00000169470.1 ENSMUSP00000126810.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169470.1Link to Ensembl Protein Viewer:ENSMUSP00000126810.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169470Re-query CCDS DB by Protein ID:ENSMUSP00000126810
Original member Current member NCBI NM_001302356.2 NP_001289285.1 Accepted alive Link to Nucleotide Sequence:NM_001302356.2Link to Protein Sequence:NP_001289285.1Re-query CCDS DB by Nucleotide ID:NM_001302356Re-query CCDS DB by Protein ID:NP_001289285Link to BLAST:NP_001289285.1
Original member Current member NCBI NM_001361142.1 NP_001348071.1 Accepted alive Link to Nucleotide Sequence:NM_001361142.1Link to Protein Sequence:NP_001348071.1Re-query CCDS DB by Nucleotide ID:NM_001361142Re-query CCDS DB by Protein ID:NP_001348071Link to BLAST:NP_001348071.1
Original member Current member NCBI NM_001361143.1 NP_001348072.1 Accepted alive Link to Nucleotide Sequence:NM_001361143.1Link to Protein Sequence:NP_001348072.1Re-query CCDS DB by Nucleotide ID:NM_001361143Re-query CCDS DB by Protein ID:NP_001348072Link to BLAST:NP_001348072.1
Original member Current member NCBI NM_001361144.1 NP_001348073.1 Accepted alive Link to Nucleotide Sequence:NM_001361144.1Link to Protein Sequence:NP_001348073.1Re-query CCDS DB by Nucleotide ID:NM_001361144Re-query CCDS DB by Protein ID:NP_001348073Link to BLAST:NP_001348073.1
Original member Current member NCBI NM_001361145.1 NP_001348074.1 Accepted alive Link to Nucleotide Sequence:NM_001361145.1Link to Protein Sequence:NP_001348074.1Re-query CCDS DB by Nucleotide ID:NM_001361145Re-query CCDS DB by Protein ID:NP_001348074Link to BLAST:NP_001348074.1
Original member Current member NCBI NM_172633.4 NP_766221.1 Accepted alive Link to Nucleotide Sequence:NM_172633.4Link to Protein Sequence:NP_766221.1Re-query CCDS DB by Nucleotide ID:NM_172633Re-query CCDS DB by Protein ID:NP_766221Link to BLAST:NP_766221.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289285.1 224 Q8BGU2 224 100% 0 0
NP_001348071.1 224 Q8BGU2 224 100% 0 0
NP_001348072.1 224 Q8BGU2 224 100% 0 0
NP_001348073.1 224 Q8BGU2 224 100% 0 0
NP_001348074.1 224 Q8BGU2 224 100% 0 0
NP_766221.1 224 Q8BGU2 224 100% 0 0

Chromosomal Locations for CCDS 29388.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 86713069 86713425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 86716276 86716395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 86716581 86716778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGCCCGCGCCTGGCCAGGGCCCCAGAGGGCCGCTGCTGAGCATGCCCGGGCGCCGGGGGGCGCTGCGTG
AG
CCAGCCGACTTTGGCTCCAGCCTGGGGGCGGTGCTGGCCCTGCTGTTGCTGCTGCTGCCCGCCTGCTG
C
CCCGTAAGGGCTCAGAACGACACGGAGCCCATCGTGCTAGAGGGCAAGTGCCTGGTAGTGTGCGATTCC
AGC
CCATCGGGGGATGGCGCCGTCACTTCTTCCCTGGGCATTTCTGTGCGCTCAGGCAGTGCCAAGGTGG
CC
TTCTCCGCTACTCGGAGCACCAACCACGAGCCGTCAGAGATGAGCAACCGTACCATGACCATCTACTT
C
GACCAGGTCTTAGTAAACATTGGCAACCACTTTGACCTTGCCTCCAGTATATTTGTAGCACCAAGAAAG
GGA
ATTTATAGCTTCAGCTTCCACGTGGTCAAAGTGTACAACAGACAAACTATCCAGGTCAGCTTAATGC
AG
AATGGCTACCCGGTGATCTCTGCATTTGCCGGAGACCAGGATGTTACCAGGGAAGCAGCCAGCAATGG
T
GTTCTGCTGCTCATGGAAAGAGAAGACAAAGTTCATCTCAAACTAGAGAGAGGCAACCTCATGGGAGGC
TGG
AAATACTCCACATTCTCGGGCTTCTTGGTTTTTCCTCTATAG


Translation (224 aa):
MPAPGQGPRGPLLSMPGRRGALREPADFGSSLGAVLALLLLLLPACCPVRAQNDTEPIVLEGKCLVVCDS
S
PSGDGAVTSSLGISVRSGSAKVAFSATRSTNHEPSEMSNRTMTIYFDQ
VLVNIGNHFDLASSIFVAPRK
G
IYSFSFHVVKVYNRQTIQ
VSLMQNGYPVISAFAGDQDVTREAASNGVLLLMEREDKVHLKLERGNLMGG
W
KYSTFSGFLVFPL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser