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Report for CCDS2932.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2932.1 Public Homo sapiens 3 CPOX 24 110 108 CCDS HistoryNCBI Gene:1371Re-query CCDS DB by CCDS ID:2932.1Re-query CCDS DB by GeneID:1371See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2932.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000647941.2 ENSP00000497326.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000647941.2Link to Ensembl Protein Viewer:ENSP00000497326.1Re-query CCDS DB by Nucleotide ID:ENST00000647941Re-query CCDS DB by Protein ID:ENSP00000497326
Original member Current member NCBI NM_000097.7 NP_000088.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000097.7Link to Protein Sequence:NP_000088.3Re-query CCDS DB by Nucleotide ID:NM_000097Re-query CCDS DB by Protein ID:NP_000088Link to BLAST:NP_000088.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000088.3 454 P36551-1 454 100% 0 0

Chromosomal Locations for CCDS 2932.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 98580683 98580770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98581407 98581511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98585441 98585659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98588713 98588854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98590632 98590742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98591012 98591155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 98592949 98593504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGCCTTGCAGCTGGGCAGGCTGAGCTCGGGCCCCTGCTGGCTCGTGGCGCGGGGCGGCTGCGGAGGGC
CCCGCGCCTGGTCCCAGTGCGGCGGCGGAGGGCTCCGAGCCTGGTCCCAGCGCAGCGCAGCCGGACGCGT
CTGCCGGCCCCCTGGCCCGGCTGGCACGGAGCAGAGCCGCGGGCTGGGGCACGGCTCGACGTCGAGAGGC
GGCCCCTGGGTGGGGACAGGGCTGGCCGCGGCGCTGGCGGGGTTGGTGGGGCTGGCCACCGCCGCCTTCG
GGCATGTGCAGCGGGCGGAGATGTTGCCTAAGACCTCGGGGACGCGGGCCACTTCGCTGGGGAGGCCGGA
GGAGGAGGAGGATGAGCTGGCCCACCGCTGCAGCAGCTTCATGGCCCCGCCTGTGACCGACCTGGGCGAG
CTGCGAAGGAGGCCGGGCGACATGAAGACCAAGATGGAGCTGCTGATTCTGGAGACCCAGGCCCAGGTGT
GCCAGGCTCTGGCACAGGTAGACGGGGGCGCCAACTTTTCTGTGGACCGGTGGGAGAGGAAGGAAGGAGG
TGGCGGCATCAGCTGTGTACTTCAAGATGGGTGTGTTTTCGAAAAGGCTGGGGTGAGCATTTCTGTTGTT
CATGGAAATCTTTCAGAGGAAGCTGCAAAACAAATGAGAAGCAGAGGAAAAGTTCTGAAGACTAAAGATG
GTAAATTGCCATTTTGTGCTATGGGCGTGAGCTCTGTTATCCACCCCAAGAATCCTCATGCTCCTACTAT
CCATTTCAACTACAGATACTTTGAAGTAGAAGAAGCTGATGGCAACAAGCAGTGGTGGTTTGGTGGTGGA
TGTGACCTCACTCCAACATACTTGAATCAAGAAGACGCTGTCCATTTTCACAGAACTCTGAAGGAGGCTT
GTGACCAGCATGGTCCAGATCTCTACCCCAAATTTAAAAAATGGTGTGATGATTACTTCTTTATAGCCCA
TCGTGGAGAACGGCGGGGCATTGGTGGTATCTTTTTTGATGATCTTGACTCTCCGTCCAAGGAGGAGGTG
TTTCGCTTTGTACAGAGCTGTGCCAGGGCTGTAGTTCCTTCTTACATTCCCCTTGTGAAAAAGCACTGTG
ATGACTCATTCACCCCCCAGGAGAAGCTGTGGCAGCAGCTCAGAAGAGGACGGTATGTAGAATTTAATCT
GCTGTATGATCGGGGCACAAAGTTTGGCCTCTTCACTCCAGGATCCAGAATTGAAAGTATCTTGATGTCT
TTACCTCTAACTGCCCGATGGGAGTACATGCATTCACCCTCAGAGAATTCCAAAGAAGCTGAAATTCTGG
AAGTTCTACGCCATCCAAGGGACTGGGTGCGTTGA

Translation (454 aa):
MALQLGRLSSGPCWLVARGGCGGPRAWSQCGGGGLRAWSQRSAAGRVCRPPGPAGTEQSRGLGHGSTSRG
GPWVGTGLAAALAGLVGLATAAFGHVQRAEMLPKTSGTRATSLGRPEEEEDELAHRCSSFMAPPVTDLGE
LRRRPGDMKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSISVV
HGNLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVEEADGNKQWWFGGG
CDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEV
FRFVQSCARAVVPSYIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMS
LPLTARWEYMHSPSENSKEAEILEVLRHPRDWVR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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