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Report for CCDS29282.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29282.1 Public Mus musculus 18 Slc26a2 23 108 98 CCDS HistoryNCBI Gene:13521Re-query CCDS DB by CCDS ID:29282.1Re-query CCDS DB by GeneID:13521See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29282.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000146409.7 ENSMUSP00000119447.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146409.7Link to Ensembl Protein Viewer:ENSMUSP00000119447.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146409Re-query CCDS DB by Protein ID:ENSMUSP00000119447
Original member Current member NCBI NM_007885.2 NP_031911.1 Accepted alive Link to Nucleotide Sequence:NM_007885.2Link to Protein Sequence:NP_031911.1Re-query CCDS DB by Nucleotide ID:NM_007885Re-query CCDS DB by Protein ID:NP_031911Link to BLAST:NP_031911.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031911.1 739 Q62273 739 100% 0 0

Chromosomal Locations for CCDS 29282.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 61198138 61199658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61201681 61202379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGTCTTCAGAAAATAAAGAGCAGCATGACCTCTCACCGAGGGACTTACCTGAAGAAGCCTTTGGTTTCC
CA
TCTGAGCTCCCCCTGGAGACTCAAAGAAGGTCAGGCACTGACTTGAGGCAGTCTGAGACCGGTCATGG
C
CGGAGAGCTTTCCGTAGGATCCACATGGAGCTCCGTGAGAAACCAGACACAGACATCAAACAGTTTGTC
ATC
AGAGAGCTCCAGAAGAGTTGCCAGTGCAGCGCAGCCAAAGTCAGAGACGGGGCTTTTGATTTCTTTC
CT
GTTTTGCGGTGGCTCCCAAAATATGACCTGAAGAAAAACATTTTAGGTGATGTGATGTCTGGCCTGAT
T
GTGGGTATCCTGTTGGTGCCCCAGTCCATTGCTTACTCCCTGCTGGCTGGCCAGGAGCCTATATATGGT
CTA
TATACATCATTTTTTGCCAGCATTATTTATTTCCTGTTTGGTACATCCCGCCACATCTCTGTGGGCA
TT
TTTGGAATACTGTGCCTTATGATTGGTGAGGTTGTTGACCGAGAACTACATAAAGCCTGCCCTGACAC
T
GATGCTACGTCATCTTCGATAGCAGTGTTTTCAAGTGGATGTGTGGTTGTAAACCATACATTAGACGGA
CTC
TGTGATAAAAGCTGCTATGCAATTAAAATTGGCAGCACTGTGACCTTCATGGCTGGAGTTTATCAGG
TA
GCAATGGGCTTCTTTCAAGTGGGCTTTGTCTCTGTCTACCTCTCCGACGCCTTGCTGAGCGGGTTTGT
C
ACTGGCGCCTCCTTCACCATCCTCACGTCTCAGGCCAAGTACCTCCTTGGGCTGAGCCTTCCTCGGAGT
CAT
GGTGTCGGCTCAGTCATTACTACCTGGATCCACATCTTCAGAAACATCCGTAACACCAACATCTGTG
AT
CTCATCACCAGCCTTTTATGTCTTCTGGTCCTCGTGCCATCCAAAGAACTCAATGAGCACTTCAAGGA
C
AAGCTCAAGGCTCCAATTCCGGTCGAGCTCATTGTCGTTGTGGCGGCCACATTGGCTTCTCATTTTGGA
AAA
CTAAATGGGAATTACAATTCCAGTATTGCTGGACACATTCCCACTGGGTTTATGCCACCCAAAGCAC
CA
GACTGGAGCCTCATTCCTAATGTGGCTGTAGATGCAATAGCTATTTCTATCATTGGTTTTGCTATCAC
T
GTATCACTTTCTGAGATGTTTGCCAAGAAACATGGCTACACGGTCAAAGCAAACCAAGAAATGTATGCC
ATT
GGCTTTTGCAATATCATACCTTCCTTCTTCCACTGCATAACTACTAGTGCAGCTCTTGCAAAGACAT
TG
GTTAAAGAGTCAACAGGCTGCCAGACGCAGCTGTCAGCTATAGTGACAGCCCTTGTCCTTTTGTTGGT
C
CTTCTGGTAATAGCTCCTTTATTCTATTCCCTTCAAAAATGTGTCCTTGGTGTGATCACTATTGTAAAT
CTC
CGGGGCGCACTTCTGAAATTTAGAGACCTGCCAAAGATGTGGAGGCTAAGCAGAATGGATACAGTTA
TC
TGGTTTGTGACTATGCTGTCCTCCGCTCTGTTAAGCACTGAAATAGGCCTGCTGGTTGGGGTTTGTTT
T
TCAATGTTCTGTGTGATCCTCCGTACTCAGAAGCCAAAGAATTCACTGCTTGGTTTAGAAGAAGAATCT
GAA
ACCTTTGAATCCATTTCCACTTACAAGAACCTTCGGAGCAAGTCCGGCATCAAGGTTTTCCGCTTCA
TA
GCCCCTCTCTACTACATAAACAAAGAGTGCTTTAAATCAGCTTTGTACAAGAAAGCTCTTAACCCAGT
C
TTGGTAAAGGCAGCTTGGAAAAAGGCAGCAAAGAGAAAACTCAAAGAAGAAATGGTGACCTTTCGTGGG
GAC
CCGGATGAAGTTTCAATGCAGCTTTCCCATGATCCCTTGGAGGTGCACACTATCGTGATCGACTGTA
GT
GCCATACAGTTTTTAGACACAGCAGGAATCCACACACTGAAAGAAGTTCGCCGGGATTATGAAGCCGT
T
GGGATCCAGGTTTTACTGGCGCAGTGCAATCCTTCTGTGAGGGATTCCTTGGCCAGAGGAGAATATTGC
AAA
AAGGAAGAGGAAACCCTTCTCTTCTACAGTCTGTCTGAAGCAGTAGCCTTTGCAGAAGACTCTCAGA
AT
CAGAAAGGGGTGTGTGTTGTCAACGGTCTGAGTCTCTCTGGTGACTGA


Translation (739 aa):
MSSENKEQHDLSPRDLPEEAFGFPSELPLETQRRSGTDLRQSETGHGRRAFRRIHMELREKPDTDIKQFV
I
RELQKSCQCSAAKVRDGAFDFFPVLRWLPKYDLKKNILGDVMSGLIVGILLVPQSIAYSLLAGQEPIYG
L
YTSFFASIIYFLFGTSRHISVGIFGILCLMIGEVVDRELHKACPDTDATSSSIAVFSSGCVVVNHTLDG
L
CDKSCYAIKIGSTVTFMAGVYQ
VAMGFFQVGFVSVYLSDALLSGFVTGASFTILTSQAKYLLGLSLPRS
H
GVGSVITTWIHIFRNIRNTNICDLITSLLCLLVLVPSKELNEHFKDKLKAPIPVELIVVVAATLASHFG
K
LNGNYNSSIAGHIPTGFMPPKAPDWSLIPNVAVDAIAISIIGFAITVSLSEMFAKKHGYTVKANQEMYA
I
GFCNIIPSFFHCITTSAALAKTLVKESTGCQTQLSAIVTALVLLLVLLVIAPLFYSLQKCVLGVITIVN
L
RGALLKFRDLPKMWRLSRMDTVIWFVTMLSSALLSTEIGLLVGVCFSMFCVILRTQKPKNSLLGLEEES
E
TFESISTYKNLRSKSGIKVFRFIAPLYYINKECFKSALYKKALNPVLVKAAWKKAAKRKLKEEMVTFRG
D
PDEVSMQLSHDPLEVHTIVIDCSAIQFLDTAGIHTLKEVRRDYEAVGIQVLLAQCNPSVRDSLARGEYC
K
KEEETLLFYSLSEAVAFAEDSQNQKGVCVVNGLSLSGD




Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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