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Report for CCDS28972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28972.1 Public Mus musculus 17 Ttc27 23 108 98 CCDS HistoryNCBI Gene:74196Re-query CCDS DB by CCDS ID:28972.1Re-query CCDS DB by GeneID:74196See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28972.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024882.7 ENSMUSP00000024882.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024882.7Link to Ensembl Protein Viewer:ENSMUSP00000024882.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000024882Re-query CCDS DB by Protein ID:ENSMUSP00000024882
Original member Current member NCBI NM_152817.4 NP_690030.3 Accepted alive Link to Nucleotide Sequence:NM_152817.4Link to Protein Sequence:NP_690030.3Re-query CCDS DB by Nucleotide ID:NM_152817Re-query CCDS DB by Protein ID:NP_690030Link to BLAST:NP_690030.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690030.3 847 Q8CD92-1 847 100% 0 0

Chromosomal Locations for CCDS 28972.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74717912 74718011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74718634 74718811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74721521 74721650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74724618 74724758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74729883 74729985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74739598 74739762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74742918 74743051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74747652 74747764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74751062 74751128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74770243 74770356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74777644 74777739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74780783 74780905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74799184 74799411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74829492 74829590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74835333 74835385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74840299 74840464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74856409 74856606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74858009 74858120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74862046 74862146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74863334 74863456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2544 nt):
ATGCCGGGAATGATGTGGACGCCGGAGCTGGCGCTTCTGAGGGGCTTCTCCACGGAGGCGGAGCGGCTGG
TTTGGAAGCAGGAGGGCATCTGTGGTTCAGATATTGGAGTTTTCTTAGAATTGCTGTTAGAAGGGAGCTA
TGAGGCTTTGTTCTTCCATTCAACGACACAAACTATTTTAAATTCAACAATGATGGCTGAAGAAAAGATT
GACAGCTACCTGGAGAAGCAGATAGTGAATTTCCTGGATTGCTCTACAGATTTGGAAGAAATTGAAAGAC
AGCAGCTGGTATTCCTACTTGGTGTGAGCAGCTTGCAGCTTTTTGTCCAGAGCAACTGGACTGGACCTCT
TGTGGACTTGCATCCTCAGGATTTCTTGCCATCTGGTCTGCTGGAGCAATTCAGTGAGGTCAAAGGACTG
GATGCTATTATTATGGGTCTCCTCATTCTAGATGGTGAATCAGTCTACAGCCTCACTTCAAAGCCCATAC
TGCTGCTAATAGCACGCATTATCCTAGTGAACATCAGACATAAATTGACAGCTCTCCAGAGCTTGCCATG
GTGGACGTTGAGATATGTGAATATTCATCAGCAATTGCTTGAGGAGCGATCACCTCAGCTTTTTGCTCTT
GCCAAAAACTGTATTGATCAAGTGATGAAACAGGAGAATTTATTTGAAGGTGATTCAGGTCGACTTTTGG
CTATTCAATTTCATCTGGAATGTGCACATGTATTTTTATATTATTATGAATATAAAGAAGCAAAGGACCA
GTTCAGTACTGCTAAAGACATCAGCAAGTTAGAGATTGACCTGACAGGTGCCTTGGGAAAAAGGACACGA
TTCCAGGAAAATTACGTGGCGCAGCTGATTGTAGATGTCAGGAGAAAAGAGGCTGTCCCTTTCAGTTGTG
AGTTCAGCCCAGCACCCACGCCCCAGGAGTGTTTGGCCAAGAATCTTGAGCTCAATGATGATACTGTTCT
GAATGAAATAAAGTTAGCAGATAGTGAACGGTTTCAGATGCCAGACCTGTGTGCGGAGGAGCTTGCCGTG
GTCCTTGGAGTCTGCACAAATTTCCAGAAGAACAACCCAGTTCATAAGCTAACGGAGGAGGAGCTGCTGG
CCTTCACATCGTGTTTACTTTCACAACCAAAGTTCTGGGCCATTCAGATGTCAGCCTTGATCCTCCGGAC
AAAACTTGAGAGAGGAAGCACACGGCGAGTGGAGCGGGCCATGAGGCAGACCCAGGCTCTTGCAGACCAA
TTCGAAGATAAAGCCACATCTGTACTGGAACGTCTGAAGATTTTCTATTGTTGTCAAGTACCCCCTCACT
GGGCTGTTCAGCGCCAGCTCGCAGGTTTGCTGTTTGAGTTGGGATGCACCTCCTCAGCCCTGCAGATATT
TGAGAAGCTGGAGATGTGGGAGGATGTGGTCATCTGCCACGAGAGGGCTGGGCGGCACGGGAAGGCAGAA
GAAATACTTAGGCAAGAACTGGAGAAAAAGGAAACACCAGGTTTATATTGCTTACTTGGAGATGTCCTGC
AGGACCATTCCTGCTACGACAAGGCCTGGGAGCTGTCCCGGCATCGCAGTGCACGTGCCCAGCGCTCCAA
AGCTCTCCTCCATCTTCGGAACAAGGAGTTTCGGGAATGTGTGGAGTGCTTCGAGCGCTCAGTGAAGATC
AATCCCATGCAGCTCGGGGTCTGGTTCTCTCTAGGCTGCGCCTACTTGGCCTTGGAAGACTATGGTGGAT
CAGCAAAGGCGTTTCAGCGTTGTGTGACCCTAGAACCCGATAATGCTGAGGCTTGGAACAATTTATCTAC
TTCCTATATTCGATTAAAGCAAAAAGTCAAAGCTTTTAGAACGTTACAAGAAGCCCTCAAGTGTAACTAC
GAACACTGGCAAATCTGGGAAAACTACATTCTCACCAGCACCGATGTCGGGGAGTTTGGGGAAGCCATCA
AAGCTTACCACCGGCTCCTGGACCTCCGAGACAAATACAAAGATATTCAGGTCCTTAAAATTCTGGTCCA
GGCAGTGGTTAATGATATGACCGACCGAAGTGGAGCTGTTGCCTCCAGCCTCAAAGGCAAGCTGCAGGAG
TTGTTTGGCAGAATAACTTCAAGGGTGACCAATGACGGAGAAGTCTGGAGACTGTATGCCCAAGTGCATG
GGAATGGGCAGAGTGAGAAGCCAGATGAGAACGACAAGGCATTCCAGTGTCTCTCGAAGGCGTACAAGTG
TGACACACAGTCCAGTTGTTGGGAGAAAGATGCTACAGCATTTAAGGAAGTTGTTCAAAGAGCCATAGGA
CTCGCTCATGTGGCTATGAAATGCGCTGAGAGCAAGTCCATTCCCCAGGAAGCTGTACAAACACTTTCTT
CAGTTCGACTCAATTTACGTGGCTTGTTATCCAAAGCAAAGCAGAATTTTACAGATGTGGTAAGTGGAGA
AGTCTCTGGAGAGCTCGCCAGTGAAATAGCAGCTGTGAATGCTCTGGAGGCAGAGCTGCAAGACCTCAGC
AACCAGCTTCGAAACCGGTACTGA

Translation (847 aa):
MPGMMWTPELALLRGFSTEAERLVWKQEGICGSDIGVFLELLLEGSYEALFFHSTTQTILNSTMMAEEKI
DSYLEKQIVNFLDCSTDLEEIERQQLVFLLGVSSLQLFVQSNWTGPLVDLHPQDFLPSGLLEQFSEVKGL
DAIIMGLLILDGESVYSLTSKPILLLIARIILVNIRHKLTALQSLPWWTLRYVNIHQQLLEERSPQLFAL
AKNCIDQVMKQENLFEGDSGRLLAIQFHLECAHVFLYYYEYKEAKDQFSTAKDISKLEIDLTGALGKRTR
FQENYVAQLIVDVRRKEAVPFSCEFSPAPTPQECLAKNLELNDDTVLNEIKLADSERFQMPDLCAEELAV
VLGVCTNFQKNNPVHKLTEEELLAFTSCLLSQPKFWAIQMSALILRTKLERGSTRRVERAMRQTQALADQ
FEDKATSVLERLKIFYCCQVPPHWAVQRQLAGLLFELGCTSSALQIFEKLEMWEDVVICHERAGRHGKAE
EILRQELEKKETPGLYCLLGDVLQDHSCYDKAWELSRHRSARAQRSKALLHLRNKEFRECVECFERSVKI
NPMQLGVWFSLGCAYLALEDYGGSAKAFQRCVTLEPDNAEAWNNLSTSYIRLKQKVKAFRTLQEALKCNY
EHWQIWENYILTSTDVGEFGEAIKAYHRLLDLRDKYKDIQVLKILVQAVVNDMTDRSGAVASSLKGKLQE
LFGRITSRVTNDGEVWRLYAQVHGNGQSEKPDENDKAFQCLSKAYKCDTQSSCWEKDATAFKEVVQRAIG
LAHVAMKCAESKSIPQEAVQTLSSVRLNLRGLLSKAKQNFTDVVSGEVSGELASEIAAVNALEAELQDLS
NQLRNRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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