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Report for CCDS28781.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28781.1 Public Mus musculus 17 Or2n1d 23 108 98 CCDS HistoryNCBI Gene:258803Re-query CCDS DB by CCDS ID:28781.1Re-query CCDS DB by GeneID:258803See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28781.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077203.2 ENSMUSP00000076443.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077203.2Link to Ensembl Protein Viewer:ENSMUSP00000076443.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000077203Re-query CCDS DB by Protein ID:ENSMUSP00000076443
Original member Current member EBI ENSMUST00000208539.2 ENSMUSP00000146828.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208539.2Link to Ensembl Protein Viewer:ENSMUSP00000146828.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208539Re-query CCDS DB by Protein ID:ENSMUSP00000146828
Original member Current member EBI ENSMUST00000208525.2 ENSMUSP00000147166.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208525.2Link to Ensembl Protein Viewer:ENSMUSP00000147166.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000208525Re-query CCDS DB by Protein ID:ENSMUSP00000147166
Original member Current member EBI ENSMUST00000216963.1 ENSMUSP00000149856.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216963.1Link to Ensembl Protein Viewer:ENSMUSP00000149856.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216963Re-query CCDS DB by Protein ID:ENSMUSP00000149856
Original member Current member EBI ENSMUST00000214035.1 ENSMUSP00000149871.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214035.1Link to Ensembl Protein Viewer:ENSMUSP00000149871.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214035Re-query CCDS DB by Protein ID:ENSMUSP00000149871
Original member Current member NCBI NM_146807.1 NP_667018.1 Accepted alive Link to Nucleotide Sequence:NM_146807.1Link to Protein Sequence:NP_667018.1Re-query CCDS DB by Nucleotide ID:NM_146807Re-query CCDS DB by Protein ID:NP_667018Link to BLAST:NP_667018.1

Chromosomal Locations for CCDS 28781.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 38335159 38336097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGCTGTAACCAATGAAAGCCACCCAAAAGAATTCATCCTACTGGGCTTTGCTAACCATCCTTGGCTGG
AACTCCCTCTTTTTGTTACTCTTCTGATAACATATCCCATGGCTTTGATGGGGAACATCGCCATCATTCT
GGTGTCAACCTTAGACCCTCGTCTCCACAGCCCCATGTACTTTTTCCTCACAAATCTCTCCTTTCTGGAC
ATGTGCTACACCACAAGCATTGTGCCTCAGATGCTGTTTAACCTGGGGAGCTCCAGAAAAACTATTACTT
ACATTGGATGTGTTGTTCAACTTTATGTCTTCCACATAATGGGAGGCACAGAATGTCTACTTTTGGCTAT
TATGTCCTTTGATCGATATGTGGCTATCTGCAAACCTCTCCACTACACCCTCATCATGAACCAAAGAGTG
TGCATTTTGTTAGTGTCTATTATGTGGCTGACTGGCGTGATCTTTGCTTTTTCAGAGGCTACACTTACAT
TACAATTGCCATTGTGTGGCATACATAAACTGGATCATTTATTGTGTGAAATCCCAGTTCTCATAAAAAC
TGCCTGTGGTGAAAAGGAGTCTAATGAGCTAGCACTTTCTGTGGTATGCATTTTTATACTGGCTGTTCCT
CTGTGCTTAATTCTTGCTTCTTATGTTAATATTGGGTGTGCAGTACTTAGAATTAAATCTTCTGAAGGAA
GGAAAAAAGCCTTTGGGACATGTTCTTCCCATCTTGTTGTAGTTTCTTTATTCTATGGTCCAGCCATTAG
CATGTACCTTCAGCCTTCTTCATCCATTACAAGGGACCAACCCAAGTTCATGGCTCTCTTTTATGCAGTG
ATAACTCCTACACTGAATCCATTCATCTATACCCTAAGAAACAAGGATGTAAAGGGTGCCTTAAAAAAAC
TCCTGAGAAGCATTTTCAGTTCAAAATGA

Translation (312 aa):
MAVTNESHPKEFILLGFANHPWLELPLFVTLLITYPMALMGNIAIILVSTLDPRLHSPMYFFLTNLSFLD
MCYTTSIVPQMLFNLGSSRKTITYIGCVVQLYVFHIMGGTECLLLAIMSFDRYVAICKPLHYTLIMNQRV
CILLVSIMWLTGVIFAFSEATLTLQLPLCGIHKLDHLLCEIPVLIKTACGEKESNELALSVVCIFILAVP
LCLILASYVNIGCAVLRIKSSEGRKKAFGTCSSHLVVVSLFYGPAISMYLQPSSSITRDQPKFMALFYAV
ITPTLNPFIYTLRNKDVKGALKKLLRSIFSSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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