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Report for CCDS28605.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28605.1 Public Mus musculus 17 Pde9a 23 108 98 CCDS HistoryNCBI Gene:18585Re-query CCDS DB by CCDS ID:28605.1Re-query CCDS DB by GeneID:18585See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28605.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047168.12 ENSMUSP00000038005.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047168.12Link to Ensembl Protein Viewer:ENSMUSP00000038005.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000047168Re-query CCDS DB by Protein ID:ENSMUSP00000038005
Original member Current member EBI ENSMUST00000127929.7 ENSMUSP00000117611.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000127929.7Link to Ensembl Protein Viewer:ENSMUSP00000117611.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000127929Re-query CCDS DB by Protein ID:ENSMUSP00000117611
Original member NCBI NM_001163748.1 NP_001157220.1 Updated not alive Link to Nucleotide Sequence:NM_001163748.1Link to Protein Sequence:NP_001157220.1Re-query CCDS DB by Nucleotide ID:NM_001163748Re-query CCDS DB by Protein ID:NP_001157220
Current member NCBI NM_001163748.2 NP_001157220.1 Accepted alive Link to Nucleotide Sequence:NM_001163748.2Link to Protein Sequence:NP_001157220.1Re-query CCDS DB by Nucleotide ID:NM_001163748Re-query CCDS DB by Protein ID:NP_001157220Link to BLAST:NP_001157220.1
Original member NCBI NM_008804.4 NP_032830.3 Updated not alive Link to Nucleotide Sequence:NM_008804.4Link to Protein Sequence:NP_032830.3Re-query CCDS DB by Nucleotide ID:NM_008804Re-query CCDS DB by Protein ID:NP_032830
Current member NCBI NM_008804.5 NP_032830.3 Accepted alive Link to Nucleotide Sequence:NM_008804.5Link to Protein Sequence:NP_032830.3Re-query CCDS DB by Nucleotide ID:NM_008804Re-query CCDS DB by Protein ID:NP_032830Link to BLAST:NP_032830.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157220.1 534 O70628-1 534 100% 0 0
NP_032830.3 534 O70628-1 534 100% 0 0

Chromosomal Locations for CCDS 28605.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 31386288 31386356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31414101 31414171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31415280 31415357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31420245 31420288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31443166 31443220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31443838 31443908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31448367 31448451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31453402 31453480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31455054 31455128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31459075 31459161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31459901 31460005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31460179 31460261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31461571 31461727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31466355 31466468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31469794 31469898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31470681 31470809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31471759 31471854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31473158 31473259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGGGGGCCGGCTCCTCAAGCTACCGGCCCAAGGCCATCTACCTAGACATCGATGGACGCATCCAGAAGG
TGGTTTTCAGCAAGTACTGCAACTCCAGTGACATCATGGACCTGTTCTGTATCGCCACCGGCCTGCCTCG
GAACACCACCATCTCCCTTTTAACCACAGACGACGCCATGGTCTCCATCGATCCCACCATGCCTGCGAAT
TCAGAGCGCACTCCCTACAAGGTGAGACCTGTGGCTGTGAAGCAAGTGTCTGAACGAGAAGAACTTATCC
AGGGCGTGCTGGCCCAGGTGGCGGAACAATTTTCCAGAGCGTTTAAGATCAACGAGCTGAAAGCCGAAGT
TGCAAATCACCTGGCCGTGCTGGAGAAACGGGTGGAATTGGAAGGACTTAAAGTGGTGGAGATCGAAAAA
TGCAAGAGTGACATTAAAAAGATGCGGGAGGAGTTGGCAGCTAGGAACAGCAGGACCAACTGTCCATGTA
AATACAGTTTTTTGGATAACAAGAAGTTGACACCTCGACGTGATGTCCCCACTTACCCCAAGTACCTGCT
CTCCCCAGAGACCATCGAAGCCCTACGGAAGCCCACCTTTGATGTCTGGCTTTGGGAACCCAACGAGATG
CTGAGCTGTTTAGAACATATGTACCACGACCTTGGTCTGGTCAGGGACTTCAGCATCAACCCAATCACGC
TCCGCAGGTGGCTGCTCTGTGTGCATGACAACTACAGGAACAACCCCTTCCACAACTTCCGGCACTGCTT
CTGTGTGACACAGATGATGTACAGTATGGTCTGGCTCTGTGGCCTCCAGGAGAAGTTTTCCCAGATGGAC
ATCTTGGTCCTGATGACTGCAGCCATCTGCCATGACCTGGACCACCCAGGGTACAACAATACATACCAGA
TCAATGCCCGCACGGAACTCGCTGTGCGCTACAACGACATCTCACCGCTGGAGAACCACCACTGCGCCAT
TGCCTTCCAGATCCTGGCAAGACCTGAGTGCAACATCTTCGCCAGTGTGCCACCCGAGGGCTTCAGGCAG
ATCAGGCAGGGGATGATCACATTGATCCTGGCTACCGACATGGCAAGGCATGCTGAAATTATGGATTCTT
TCAAAGAAAAGATGGAGAATTTTGACTACAGCAACGAGGAGCACCTGACCCTGCTGAAGATGATTCTCAT
AAAATGCTGTGATATCTCCAATGAAGTCCGTCCCATGGAGGTGGCAGAACCGTGGGTGGACTGTTTACTG
GAAGAATATTTTATGCAGAGTGACCGTGAGAAGTCCGAAGGCCTTCCTGTGGCCCCATTCATGGACCGAG
ACAAAGTGACCAAAGCAACAGCCCAAATTGGGTTCATCAAGTTTGTCCTGATCCCAATGTTTGAAACAGT
GACCAAGCTCTTCCCCGTTGTTGAGGAGACCATGCTGCGGCCGCTCTGGGAGTCCCGAGAACACTACGAG
GAGCTGAAGCAGCTGGACGATGCCATGAAGGAGTTGCAGAAGAAGACAGAGAGCTTAACATCTGGGGCCC
CGGAAAACACCACAGAGAAGAACAGAGATGCAAAAGACAGTGAAGGCCATTCTCCTCCAAACTGA

Translation (534 aa):
MGAGSSSYRPKAIYLDIDGRIQKVVFSKYCNSSDIMDLFCIATGLPRNTTISLLTTDDAMVSIDPTMPAN
SERTPYKVRPVAVKQVSEREELIQGVLAQVAEQFSRAFKINELKAEVANHLAVLEKRVELEGLKVVEIEK
CKSDIKKMREELAARNSRTNCPCKYSFLDNKKLTPRRDVPTYPKYLLSPETIEALRKPTFDVWLWEPNEM
LSCLEHMYHDLGLVRDFSINPITLRRWLLCVHDNYRNNPFHNFRHCFCVTQMMYSMVWLCGLQEKFSQMD
ILVLMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAIAFQILARPECNIFASVPPEGFRQ
IRQGMITLILATDMARHAEIMDSFKEKMENFDYSNEEHLTLLKMILIKCCDISNEVRPMEVAEPWVDCLL
EEYFMQSDREKSEGLPVAPFMDRDKVTKATAQIGFIKFVLIPMFETVTKLFPVVEETMLRPLWESREHYE
ELKQLDDAMKELQKKTESLTSGAPENTTEKNRDAKDSEGHSPPN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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