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Report for CCDS28382.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28382.1 Public Mus musculus 17 Prr18 23 108 98 CCDS HistoryNCBI Gene:320111Re-query CCDS DB by CCDS ID:28382.1Re-query CCDS DB by GeneID:320111See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28382.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069742.7 ENSMUSP00000069019.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069742.7Link to Ensembl Protein Viewer:ENSMUSP00000069019.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069742Re-query CCDS DB by Protein ID:ENSMUSP00000069019
Original member Current member EBI ENSMUST00000163887.1 ENSMUSP00000127393.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163887.1Link to Ensembl Protein Viewer:ENSMUSP00000127393.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163887Re-query CCDS DB by Protein ID:ENSMUSP00000127393
Original member Current member NCBI NM_178774.4 NP_848889.3 Accepted alive Link to Nucleotide Sequence:NM_178774.4Link to Protein Sequence:NP_848889.3Re-query CCDS DB by Nucleotide ID:NM_178774Re-query CCDS DB by Protein ID:NP_848889Link to BLAST:NP_848889.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848889.3 307 Q6PAN7-1 307 100% 0 0

Chromosomal Locations for CCDS 28382.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8341014 8341937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGCTCCGCTTGCTCGGCAGAGTCATGTCATTCCTGCCTATGCCGCCGCCGCCGCCACCACCACCGCCGC
CC
CCCCGAACTCCGGGGGGCCCCGCTGCGCGCCAGCTATCCCGGAGACCCTGTGCGCCGCCCGCGCCTTC
A
CCGCCCGCTGCCTCCGCCGCCGGCGGCGAGAAAAAGAGGAGGCCGCCCGAGATGCTGCTCTCCAGCTCC
TGG
CCCTCCGCCACCTTGAAGAGGCCCCCGGTACGGCGCGGCCCCGGCCTGGGTTCGGGCACCCCACAGC
CG
GCTACCTCCGCACGCGTCCCGCCCCAGCCCTCTCCGGGCCGTGGGGGGACCTCGACCACGTGCTCCGC
G
CCCCGGCGGGTCGCCTGCAGCCACATCCCAGCGGGATCCACCGCCTCGGGGACCTCTGCGGGGGCGGGG
GCT
GGGCCCGACGACGCCACGCGCTTCTCCTTGAACCTCACCCCAGAAGCCATCCTGGTCATCCAGAGGC
GC
CACCTGGAGAAGCAGTTGCTGGCGCGACCCCGCAGGCCCTTCCCCACACCCTCTGCCGACCCGCGGCT
C
CCACTGGTACCCTGTCCCCGGACCAGGGCTTCGACCCTGCGGAGGGGTGGCCCCACCAGTGTCCCCAAC
GCG
CCTCTGGCTGTGGCTGTCAGCAGCCGCCCTCCCCGTGCCTCGCTGCTGCCAGGAGGTCTGCAGGCCA
CT
CTGCCCAGCCCGTGCCCCTCCAGCCTGCGCCCAGTGCTTAAGGTGTCGCTGCTCAATGAGAAGCACAA
G
TACGATGATGAGGAGTACGAGGAGGAGGTGGAGGTGGTGGACGAGGGCCTCGTGCGCAAGTGCACCGAG
TGG
CTGCGTGGGGTCGAGTCGGCGGCAGCTGCGAGGGGCCGCACAGGGCATCTGGACTCGCTGCCACACC
TG
AGCACCCTGTGA


Translation (307 aa):
MLRLLGRVMSFLPMPPPPPPPPPPPRTPGGPAARQLSRRPCAPPAPSPPAASAAGGEKKRRPPEMLLSSS
W
PSATLKRPPVRRGPGLGSGTPQPATSARVPPQPSPGRGGTSTTCSAPRRVACSHIPAGSTASGTSAGAG
A
GPDDATRFSLNLTPEAILVIQRRHLEKQLLARPRRPFPTPSADPRLPLVPCPRTRASTLRRGGPTSVPN
A
PLAVAVSSRPPRASLLPGGLQATLPSPCPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTE
W
LRGVESAAAARGRTGHLDSLPHLSTL




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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