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Report for CCDS28346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28346.1 Public Mus musculus 16 Hlcs 23 108 98 CCDS HistoryNCBI Gene:110948Re-query CCDS DB by CCDS ID:28346.1Re-query CCDS DB by GeneID:110948See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28346.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099512.2 ENSMUSP00000097112.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099512.2Link to Ensembl Protein Viewer:ENSMUSP00000097112.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099512Re-query CCDS DB by Protein ID:ENSMUSP00000097112
Original member Current member EBI ENSMUST00000163193.8 ENSMUSP00000130981.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163193.8Link to Ensembl Protein Viewer:ENSMUSP00000130981.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163193Re-query CCDS DB by Protein ID:ENSMUSP00000130981
Original member NCBI NM_139145.5 NP_631884.1 Updated not alive Link to Nucleotide Sequence:NM_139145.5Link to Protein Sequence:NP_631884.1Re-query CCDS DB by Nucleotide ID:NM_139145Re-query CCDS DB by Protein ID:NP_631884
Current member NCBI NM_139145.6 NP_631884.1 Accepted alive Link to Nucleotide Sequence:NM_139145.6Link to Protein Sequence:NP_631884.1Re-query CCDS DB by Nucleotide ID:NM_139145Re-query CCDS DB by Protein ID:NP_631884Link to BLAST:NP_631884.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631884.1 722 Q920N2 722 100% 0 0

Chromosomal Locations for CCDS 28346.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 94131794 94131965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94133001 94133214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94134649 94134763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94138809 94138969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94141349 94141416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94231064 94231335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94262592 94262774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94267376 94268307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94268536 94268587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGGAGGACAGGCTCCAGATGGACAACGGCCTGATAGCCCAGAAGATCGTTTCAGTCCACTTAAAGGACC
CTGCTCTGAAGGAACTCGGCAAAGCCTCCGACAAGCAAGTGCAGGGCCCGCCCCCGGGCCCAGAAGCTTC
CCCCGAGGCCCAGCCTGCACAAGGTGTCATGGAGCATGCTGGCCAAGGTGATTGCAAGGCCGCCGGTGAA
GGCCCTTCCCCACGGAGGAGGGGCTGTGCCCCTGAAAGTGAGCCTGCTGCAGATGGGGACCCAGGGCTGA
GCTCCCCGGAGCTCTGTCAGCTCCACCTGTCCATCTGTCACGAGTGTCTGGAGCTCGAGAACAGTACCAT
TGACTCGGTGAGGTCTGCGTCTGCGGAGAACATTCCAGACCTTCCCTGTGATCACAGCGGCGTGGAGGGT
GCTGCGGGCGAACTCTGCCCCGAACGGAAAGGGAAGAGAGTCAACATTTCGGGAAAGGCGCCCAATATCT
TGCTGTATGTGGGCTCTGGTTCCGAGGAAGCCCTGGGCCGGCTCCAGCAGGTGCGATCTGTCCTGACTGA
CTGTGTGGACACGGACAGCTACACTCTCTACCACCTGCTGGAAGACAGCGCTCTGAGGGACCCGTGGTCT
GACAACTGCCTCCTGCTAGTTATTGCCAGCAGGGACCCCATCCCCAAAGACATACAGCACAAGTTCATGG
CCTATCTTTCTCAGGGAGGGAAGGTGCTGGGCCTGTCTTCCCCCTTCACGTTGGGTGGCTTTCGGGTGAC
CAGGAGAGATGTGCTACGGAACACAGTCCAGAACTTGGTTTTCTCTAAGGCTGATGGGACTGAGGTACGG
CTCAGTGTCCTGAGCAGCGGCTACGTTTATGAAGAAGGCCCGAGCTTGGGCAGGCTCCAGGGCCACCTGG
AGAATGAGGACAAGGATAAAATGATTGTGCACGTGCCTTTTGGAACCCTCGGAGGGGAAGCCGTTCTCTG
CCAGGTGCACCTGGAGCTCCCGCCCGGCGCCTCCCTGGTGCAGACTGCAGACGACTTTAACGTGCTCAAA
TCCAGCAATGTGAGAAGACACGAGGTCCTTAAGGAGATCCTGACTGCCCTCGGTCTGAGCTGTGACGCAC
CACAGGTTCCTGCCTTAACGCCCCTGTACTTACTGCTGGCCGCTGAGGAAACCCAGGATCCGTTCATGCA
GTGGCTCGGGAGGCACACAGATCCTGAAGGAATCATAAAATCCAGCAAGCTCTCCCTTCAGTTTGTTTCC
TCCTACACATCTGAAGCGGAGATCACCCCGTCTTCCATGCCTGTGGTCACTGACCCAGAAGCCTTTTCAT
CAGAGCACTTCAGCCTAGAGACCTATCGACAGAATCTGCAGACCACGCGCCTTGGGAAAGTGATTCTGTT
TGCAGAAGTGACCTCCACCACCATGAGTCTCCTGGATGGGTTGATGTTTGAGATGCCGCAGGAAATGGGC
TTAATTGCCATTGCAGTTCGGCAGACCCAGGGCAAAGGAAGGGGCCCGAATGCCTGGCTGAGCCCCGTGG
GATGTGCTCTTTCCACTCTGCTGGTCTTCATCCCCCTGAGGTCACAACTGGGACAGAGGATTCCATTTGT
CCAGCATTTGATGTCCTTGGCTGTGGTGGAGGCAGTGCGGTCTATCCCAGGGTATGAGGATATCAACTTG
CGAGTGAAGTGGCCCAACGATATTTATTACAGCGATCTCATGAAGATCGGTGGGGTTCTGGTTAATTCAA
CACTTATGGGAGAAACATTTTATATCCTCATCGGCTGTGGATTCAATGTGACGAACAGTAATCCTACCAT
TTGTATCAACGACCTCATCGAAGAACACAATAAGCAGCACGGGGCGGGCCTGAAGCCCCTGCGAGCGGAC
TGTCTCATAGCCAGAGCCGTGACCGTGCTGGAGAAACTGATCGACAGGTTTCAGGACCAAGGGCCCGACG
GCGTTCTTCCCCTCTATTATAAATACTGGGTGCACGGTGGTCAGCAAGTCCGCCTGGGCAGCACGGAGGG
GCCACAGGCATCTATTGTGGGCCTTGATGACTCCGGGTTCCTGCAGGTCCACCAAGAGGATGGTGGGGTT
GTGACGGTGCATCCAGATGGCAACTCCTTCGACATGCTGAGAAACCTCATCGTGCCCAAGCGACAGTAA

Translation (722 aa):
MEDRLQMDNGLIAQKIVSVHLKDPALKELGKASDKQVQGPPPGPEASPEAQPAQGVMEHAGQGDCKAAGE
GPSPRRRGCAPESEPAADGDPGLSSPELCQLHLSICHECLELENSTIDSVRSASAENIPDLPCDHSGVEG
AAGELCPERKGKRVNISGKAPNILLYVGSGSEEALGRLQQVRSVLTDCVDTDSYTLYHLLEDSALRDPWS
DNCLLLVIASRDPIPKDIQHKFMAYLSQGGKVLGLSSPFTLGGFRVTRRDVLRNTVQNLVFSKADGTEVR
LSVLSSGYVYEEGPSLGRLQGHLENEDKDKMIVHVPFGTLGGEAVLCQVHLELPPGASLVQTADDFNVLK
SSNVRRHEVLKEILTALGLSCDAPQVPALTPLYLLLAAEETQDPFMQWLGRHTDPEGIIKSSKLSLQFVS
SYTSEAEITPSSMPVVTDPEAFSSEHFSLETYRQNLQTTRLGKVILFAEVTSTTMSLLDGLMFEMPQEMG
LIAIAVRQTQGKGRGPNAWLSPVGCALSTLLVFIPLRSQLGQRIPFVQHLMSLAVVEAVRSIPGYEDINL
RVKWPNDIYYSDLMKIGGVLVNSTLMGETFYILIGCGFNVTNSNPTICINDLIEEHNKQHGAGLKPLRAD
CLIARAVTVLEKLIDRFQDQGPDGVLPLYYKYWVHGGQQVRLGSTEGPQASIVGLDDSGFLQVHQEDGGV
VTVHPDGNSFDMLRNLIVPKRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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